ImFusion Namespace Reference

Namespace of the ImFusion SDK. More...

Detailed Description

Namespace of the ImFusion SDK.

Namespaces
namespace	Assert
	Assertion library.
namespace	Literals
	Custom literals for classes of the ImFusion SDK.
namespace	Compression
	Data compression tools
namespace	Container
	Collection of utility functions operating on STL containers.
namespace	Cryptography
	Cryptographic tools.
namespace	DateTime
	Utility methods and classes related to date and time representation, including time zones.
namespace	Platform
	Selection of platform-specific functions.
namespace	Encoding
	Functions for encoding and decoding of binary and text data.
namespace	Hashing
	Tools and functions to compute non-cryptographics hashes, for instance to use them in std::unordered_map.
namespace	Log
	Logging framework.
namespace	PropertiesIO
	Writing and reading Properties instances to/from structured file formats.
namespace	Random
	Random number generation with convenience functions
namespace	String
	Collection of utility functions to work on or with strings.
namespace	Threading
	Utility classes for multi-threading.
namespace	Filesystem
	Classes and functions to manipulate files and directories, and the paths that identify them.
namespace	Geometry
	Classes to represent geometric primitives like lines or polygons, as well as functions dealing exclusively with such objects.
namespace	Resource
	ImFusion Resource System to store binary data in the executable/library and retrieve it at runtime.
namespace	Utils
	Generic utility classes and helper functions.
namespace	GL
	Low-level OpenGL Wrappers.
namespace	Animations
	Animating objects within the ImFusion SDK.
namespace	GUI
	Generic Abstraction Layer for Visualization and User Input Events.
namespace	MeshCreator
	Creates common mesh primitives with normals.
namespace	MeshInterpolation
	Functions for interpolating scalar functions on mesh surfaces.
namespace	PoissonReconstruction
	Different wrapper functions for Poisson Surface Reconstruction by M.
namespace	MeshProcessing
	Collection of algorithms for post-processing meshes.
namespace	Network
	Namespace for network communication bundled in the subfolder 'Stream/Network'.
namespace	ConnectivityAnalysis
	Set of functions for efficient connectivity analysis.
namespace	CpuFFT
	Fast Fourier Transform on the CPU.
namespace	Filters
	Set of functions for efficient filtering on CPU.
namespace	Framework
	Namespace containing general framework initialization methods.
namespace	ImageProcessing
	Low-level algorithms for image processing.
namespace	LicenseManagerSDK
	LicenseManagerSDK provide an interface to our license system for SDK users.
namespace	ImageMath
	Arithmetic operations on images and arrays.
namespace	OpenCV
	Conversion between ImFusion and OpenCV image containers.
namespace	Pose
	Conversion of pose matrices.
namespace	ProjectiveGeometry
	Collection of functions dealing with projective geometry.
namespace	SettingsMigration
	Helper functions for migrating settings.
namespace	AlgorithmUtils
	Collection of convenience functions to work with ImFusion Algorithms.
namespace	ImageUtils
	Collection of convenience functions to work with images.
namespace	GlUtils
	Utility functions for working with OpenGL and/or GlImages.
namespace	MeshIO
	Mesh input/output to standard mesh formats.
namespace	MetaImage
	Support for loading and saving MetaImage files.
namespace	PoseIO
	Input and output of pose matrices and affine parameters.
namespace	QtHelpers
	Some Qt convenience functions.
namespace	MarchingCubes
	Marching Cubes implementation to extract a isosurface mesh from a volume.
namespace	Dicom
	Low-level and intermediate-level interfaces for working with DICOM data.
namespace	Serialization
	Collection of utility functions for serialization and deserialization.
namespace	ML
	Namespace containing all the classes relevant for the data processing and the execution of machine learning models.
namespace	Seg
	Namespace of the Segmentation Plugin plugin.
namespace	US
	Namespace of the ImFusionUS and ImFusionLiveUS plugins.
namespace	CT
	X-ray and computed tomography.
namespace	LabelNameMatching
	Functions for matching labelnames.
namespace	ModelsManager
	Contains functionality for downloading ML models from a server and caching them on disk.
namespace	AnatomyPlugin
	Namespace of the anatomy plugin.

Classes
class	ByteBufferView
	Const view onto a sized buffer of raw binary data. More...
class	ByteBufferMutableView
	Specialization of a ByteBufferView that additionally provides non-const access to the underlying data. More...
class	ByteBuffer
	Specialization of the ByteBufferView class that has ownership of the underlying data. More...
class	ByteBufferStream
	Specialization of std::istream to easily extract data from a ByteBufferView. More...
class	ByteSize
	Helper class to facilitate handling byte sizes. More...
class	Configurable
	Base interface for classes that support object serialization from/to Properties objects. More...
class	DeprecatedSignal
	Deprecation layer for signals. More...
class	Flags
	Utility class to store a type-safe combination of enum-based bit fields. More...
class	Parameter
	The Parameter class represents a single parameter of a Configurable entity. More...
class	ParameterBase
	Shared base interface of Parameter and SubProperty so that Configurable can maintain a collection of those. More...
class	PluginBase
	Base interface to interact with a plugin that can be loaded into an application at runtime. More...
class	PluginAutoRegistrationGuard
	Helper class to automatically register a plugin when the OS loads a library. More...
class	PluginManager
	Global singleton for loading ImFusion plugins from shared libraries and initializing them. More...
class	Properties
	Storage container for serialization of arbitrary types, internally backed by strings. More...
class	GlobalSettings
	Class for storing and retrieving persistent global settings. More...
class	SignalReceiver
	Base class for classes that can contain slots (i.e. More...
class	SignalConnection
	Structure for describing/identifying individual connections between signals and slots. More...
class	SignalDebouncer
class	SignalDebouncer< DerivedSignal >
class	SignalImpl
	Implementation for a specific signal with the given signature. More...
class	SignalBlocker
	Convenient scope guard class to temporarily block signals/connections so that observers are not notified. More...
class	SignalBase
	Base interface for Signals. More...
struct	SignalMutexProxy
struct	SignalMutexProxy< false >
struct	SignalMutexProxy< true >
class	SubProperty
	The SubProperty class represents a nested record of a Configurable entity. More...
class	SubPropertyList
	The SubPropertyList class represents nested records of Configurable entities. More...
class	Transform
	The Transform class provides a transformation from a Frame to another Frame, where each Frame is a coordinate system. More...
class	Timer
	Stopwatch class to measure execution time. More...
class	LoggingTimer
	Scope guard-like stopwatch class to automatically log measured execution time on destruction of the guard object. More...
class	MultiTimer
	This class can be used to help the developer to profile the run time of different parts of the same process. More...
class	Vector
	Class representing a vector, defined in a Frame. More...
class	AssignMeshTextureAlgorithm
	Copies a RGB 2D image to use as texture for a mesh. More...
class	CombineMeshesAlgorithm
	Algorithm to combine multiple meshes into a new mesh. More...
class	ExtractMeshTextureAlgorithm
	Extracts the texture from a given mesh to an image. More...
class	CustomVertexProperty
	A custom property using vertices as geometry elements. More...
class	CustomFaceProperty
	A custom property using faces/triangles as geometry elements. More...
class	Mesh
	Represents a triangle mesh. More...
class	MeshBooleanOperationsAlgorithm
	Algorithm for performing boolean operations on meshes. More...
class	MeshCreatorAlgorithm
	Algorithm for creating common mesh primitives. More...
class	CustomPropertyElementBase
	Basic interface for the value of a custom property on a single element. More...
class	CustomPropertyElement
	Wrapper for the value of a custom property on a specific element, with conversions to and from the underlying data type. More...
struct	CustomPropertyDescriptor
class	CustomPropertyBase
	Basic interface for a custom property, i.e. a collection of values on different elements (vertices/faces). More...
class	CustomProperty
	Interface for a custom typed property, allowing access to the values at individual elements. More...
class	MeshDistanceAlgorithm
	Algorithm to compute point-wise distances between two aligned meshes, between two aligned point clouds, or between aligned point cloud and mesh. More...
class	MeshIterator
class	MeshIteratorRel
class	MeshLaplacian
	Compute co-tangent laplacian of a mesh and its eigen decomposition. More...
class	MeshMeasurementsAlgorithm
	A class that provides functions for measuring the lengths of certain curves on a mesh. More...
class	MeshMeasurementsController
class	MeshOctreeNode
	Class representing a mesh octree node. More...
class	MeshOctree
	Class representing a mesh octree. Faces of the mesh are split between the nodes of the tree, each node represents a partition of the parent volume (minimum 1/8th). More...
class	MeshPointCloudCroppingAlgorithm
	Algorithm for cropping point clouds or/and meshes. More...
class	MeshPointCloudCroppingController
	Controller for mesh (point cloud) cropping algorithm. More...
class	MeshProcessingAlgorithm
	Wraps different mesh processing functionality into a single algorithm. More...
class	PoissonSurfaceReconstructionAlgorithm
	Algorithm for computing poisson reconstruction from a point cloud with normals. More...
struct	TriMeshTraits
class	TriMesh
class	MeshGeodesicDistance
	Class for computing the geodesic distance on the mesh surface between the 2 points. More...
class	GlMeshRendererContours
	Renders the silhouette/contours of a mesh in a 3D view. More...
class	GlMeshRendererIntersection
	Renders the intersection between a Mesh and a Geometry::Plane using lines. More...
class	GlMeshRendererIntersectionLengths
	Renders the intersection lengths through a mesh in a 3D view. More...
class	GlMeshRendererNormals
	Renders the normals of a Mesh using line primitives. More...
class	GlMeshRendererSurface
	Highly configurable renderer to display the surface of a Mesh. More...
class	MeshGl
	Stores vertex and texture data of a Mesh on the GPU so that it can be rendered using OpenGL. More...
class	Algorithm
	Interface for describing algorithms that can be made available in the ImFusion Suite through AlgorithmFactory. More...
class	AlgorithmControllerFactory
	Interface for algorithm controller factories. More...
class	AlgorithmFactory
	Interface for algorithm factories. More...
class	Anatomy
	Class representing a single anatomy code ID from the SNOMED CT database. More...
class	AnatomyAlgorithm
	Edits the list of anatomies of an image (AnatomyDataComponent). More...
class	AnatomyDataComponent
	A data component storing information about anatomy contained in medical images or other data. More...
class	ApplyMaskAlgorithm
	Algorithm for applying a mask and a cropping to an image. More...
class	AsciiProgress
	Displays a basic progress bar with ASCII characters on the console window. More...
class	AttachTrackingSequenceAlgorithm
	Attach tracking sequence to existing tracked shared image set. More...
class	AverageImagesAlgorithm
	Algorithm to average multiple images. More...
class	BakeMeshDeformationAlgorithm
	Bakes an image's deformation into a mesh or point cloud. More...
class	BaseAlgorithmFactory
	Factory for algorithms in the Base module. More...
class	TypedImage
	Concrete implementation of a MemImage for a given pixel type. More...
class	BasicImageProcessing
	Basic image processing such as downsample, flip, rotate or data type change. More...
class	BinarySerializable
	Interface for class which can be serialized and deserialized. More...
class	BicubicBSplineApproximationAlgorithm
	Algorithm that approximates the content of a SharedImageSet with a bicubic B-spline. More...
class	CircleHoughTransform
	Hough transform for detecting circles. More...
class	CliqueLookupTable
	Compute a clique lookup table to identify point constellations in bigger pointclouds. More...
class	CombineImagesAlgorithm
	Algorithm to combine multiple images into a new shared image set. More...
class	CombineImagesAsVolumeAlgorithm
	Algorithm to combine multiple images into a volume. More...
class	CombinePointCloudsAlgorithm
	Algorithm to combine multiple pointclouds into a new pointcloud. More...
class	CombineSplitVolumesAlgorithm
	Algorithm to combine a number of split volumes along the Z dimension. More...
class	ConnectedComponentsAlgorithm
	Algorithm to perform an analysis of the connected components. More...
class	ContrastFilter
	Contrast-enhancing filter. More...
class	CostFunction
	Interface for a cost function that can be optimized. More...
class	CropLabelMapAlgorithm
	Class for cropping a label map around the targets with certain label values. More...
class	VolumeFreeformCroppingAlgorithm
	Algorithm to crop a volume using a freeform selection. More...
class	CompoundData
	Interface for datasets that are formed by one or multiple other nested Data instances. More...
class	CombineIntoTrackedSharedImageSetAlgorithm
	Algorithm for creating a TrackedSharedImageSet from a TrackingSequence and SharedImageSet. More...
class	Curve
	Interpolation and fitting of a 1D curve. More...
class	CustomImage
	Base interface for custom Image types that can be converted from/to MemImages and are supported by SharedImage. More...
class	Data
	Virtual base class for representing data from which all concrete data class such as images need to derive. More...
class	DataAnnotationFactory
	Interface for data annotation factories. More...
class	DataComponentBase
	Data components provide a way to generically attach custom information objects. More...
class	DataComponent
	Main specialization of DataComponentBase for regular types. More...
class	TemporaryDataComponent
	Specialization of DataComponentBase that disables serialization, copying and assignment. More...
class	DataComponentFactory
	Factory singleton for creating DataComponents from string IDs. More...
struct	PersistentDataComponent
	Base class for DataComponents that must never be deleted from a DataComponentList. More...
class	DataComponentList
	Class for holding a collection of DataComponents. More...
class	DataComponentWithParentInterface
	Interface to augment a DataComponent with a parent of type Data. More...
class	DataGroup
	Data element that groups multiple Data instances together in a hierarchical fashion. More...
class	DataHashAlgorithm
	Algorithm to compute a hash from image data. More...
class	DataLink
	Interface for linking properties between multiple Data instances. More...
class	DataList
	Container for any number of Data instances such as image or meshes. More...
class	DataModel
	Container for datasets holding ownership and managing a hierarchical list of persistent data. More...
class	DataModelAutoLinking
	Utility class to automatically create DataLink instances between datasets in a DataModel. More...
class	DatasetLicenseComponent
	Data component for keeping track of the data's license (when it comes from a public dataset). More...
class	DataSourceComponent
	Data component for keeping track of the data's origin. More...
class	DisplayOptions2d
	Configures the display options for 2D slice rendering of images. More...
class	DisplayOptions3d
	Configures the display options for 3D volume rendering of images. More...
class	DisplayRecorderAlgorithm
class	DistanceTransform
	Distance transformation algorithm. More...
class	DistanceTransformAlgorithm
	Computes a distance transformation from a label map. More...
class	DistanceVolumeAlgorithm
	Algorithm to create a distance-volume from a mesh. More...
class	ElementwiseDataComponentData
	Class for augmenting Data classes with an ElementwiseDataComponentList. More...
class	ElementwiseDataComponentList
	Class for managing multiple DataComponentLists for individual elements. More...
class	ErrorFunction
	Interface for an error function returning one or multiple values. More...
class	ExtractImagesFromVolumeAlgorithm
	Algorithm to extract 2D images from a volume. More...
class	ExtractSelection
	Algorithm to extract the current selection into a new object instance (SharedImageSet or TrackingSequence). More...
class	ExtractTrackingSequence
	Duplicate and extract TrackingSequence data of a tracked image set. More...
class	FFT
	Fast Fourier Transform abstract base class. More...
class	FactoryBase
	Abstract base class for all factories. More...
class	FactoryRegistry
	Registry for object factories. More...
class	FiducialExtraction
	Detect circles in the image patch using gradient-based (RANSAC) method. More...
class	FlowVisualizationAlgorithm
	Creates a multi-channel image for flow visualization. More...
class	FpsCounter
class	FrameBasedPointCloud
	Data structure for point clouds with frame-dependent point data. More...
class	FreeFormMeshAlgorithm
	Algorithm to convert Point Based annotation to mesh. More...
class	FrequencyFilter1D
	Apply arbitrary frequency filters to 1D input. More...
class	FrequencyFilter2D
	Apply arbitrary frequency filters to 2D input. More...
class	FrequencyFilterAlgorithm
class	Tensor
	Data class for strongly typed dense tensors of fixed rank and data type. More...
class	TensorFrequencyFilteringAlgorithm
class	TensorLocalAverageAlgorithm
class	GatingMetadata
	Metadata allowing to perform gating operations on periodic datasets acquired over time. More...
class	HistogramDataComponent
	DataComponent storing information on the intensity distribution of the image they are attached to. More...
class	HoughTransformAlgorithm
	Hough transform wrapper algorithm. More...
class	Huffman
	Huffman code for data compression. More...
class	Image
	Base class and interface for images. More...
class	ImageComparison
	Comparison of different images. More...
class	ImageCompression
	Saving and loading of compressed image data. More...
class	ImageCompressionCodec
	Saving and loading of compressed image data through video codecs. More...
struct	ImageDescriptor
	Struct describing the essential properties of an image. More...
class	ImageDescriptorWorld
	Convenience struct extending an ImageDescriptor to also include a matrix describing the image orientation in world coordinates. More...
class	ImageDownsampler
	Manager for image downsampling/upsampling. More...
class	ImageGatingAlgorithm
	Algorithm to bin image sets according to a gating signal. More...
class	ImageInfoDataComponent
	DataComponent storing general information on the image origin. More...
class	ImageInpaintingAlgorithm
	Algorithm that inpaints a masked area of an image. More...
class	ImageResamplingAlgorithm
	Algorithm for resampling an image to a target dimension or resolution, optionally with respect to another image. More...
struct	Statistics
class	ImageStatisticsAlgorithm
class	ImageTemplate
	Class representing a template for extracting image content based on named reference regions. More...
class	ImageTemplateDataComponent
	Data component for storing a ImageTemplate in a SharedImageSet. More...
class	ImFusionFileGroup
	Groups for combining different data (with additional properties) within the ImFusion file format. More...
class	ImFusionFile
	Loading and saving of the ImFusion file format. More...
class	ImFusionFilePlugin
	Allow loading and saving of custom classes and data within the ImFusion file format. More...
class	ImFusionImage
	Loading and saving of the ImFusion image format. More...
class	ImFusionLibPlugin
	Specialized interface for a plugin for the ImFusionLib. More...
class	ImFusionPlugin
	Base class for plugins that can be loaded by the ImFusion SDK. More...
class	IMURawMetadata
	Metadata for (multiple) IMU sensor raw data. More...
class	LiveSensorFusion
	Abstract base class for 9DOF sensor fusion algorithms. More...
class	PureGyro
	Basic sensor fusion. More...
class	Madgwick
	Madgwick sensor fusion. More...
class	Mahony
	Mahony sensor fusion. More...
class	RealWorldMappingDataComponent
	The RealWorldMappingDataComponent stores information about an image's real world values. More...
class	IoAlgorithm
	Interface for describing IO algorithms. More...
class	KalmanFilter
	Generic Kalman filter. More...
class	KalmanPosition
	Kalman filter for position data. More...
class	KalmanQuaternion
	Kalman filter for quaternions. More...
class	LabelDataComponent
	DataComponent to store meta data of a label map. More...
class	LabelOverlapEncoder
	Helper class to encode overlapping labels into an 8bit label map. More...
class	LabelsOperationsAlgorithm
	Algorithm to combine multiple labels set into a new shared image set. More...
class	LandmarksToImageAlgorithm
	Algorithm to generate learning data on the position of landmarks in images. More...
class	LaplacianPyramid
	Represents a pyramid of image details with decreasing resolution. More...
class	LazyInstantiatedDataComponent
	Extended interface for DataComponents that support lazy instantiation / lazy retrieval. More...
class	LC2
	Linear correlation of linear combination (LC2) similarity measure. More...
class	LevenbergMarquardt
	Levenberg-Marquardt optimizer. More...
class	MissingLicenseException
	Exception thrown in case a suitable license could not be found or activated. More...
class	LinearRegression
	Class for linear regression. More...
class	LinearSystemSolver
	Interface for linear system solvers. More...
class	IterativeLinearSystemSolver
	Interface for interative linear system solvers. More...
class	LLTFloatSolver
	Solver using Cholesky decomposition of the matrix. More...
class	LLTEigenSolver
	Solver using Cholesky decomposition of the matrix (Eigen implementation). More...
class	CGSolver
	Conjugate gradient solver (Eigen implementation). More...
class	BiCGStabSolver
	Bi-conjugate gradient solver with stabilization. More...
class	BiCGStabEigenSolver
	Bi-conjugate gradient solver with stabilization (Eigen implementation). More...
class	BiCGStabViennaCPUSolver
	Bi-conjugate gradient solver with stabilization (Vienna CPU implementation). More...
class	BiCGStabViennaGPUSolver
	Bi-conjugate gradient solver with stabilization (Vienna GPU implementation). More...
class	LineHoughTransform
class	LinkPose
	Synchronizes the pose matrix across multiple Data instances. More...
class	LinkSelection
	Synchronizes the selection of multiple Selectables. More...
class	LinkWindowing
	Synchronizes DisplayOptions2d and DisplayOptions3d of multiple images. More...
class	LogisticRegression
	Class for logistic regression. More...
class	Mask
	Base interface for implementing polymorphic image masks on the CPU. More...
class	MemImage
	Abstract base class for an image residing in main memory. More...
class	MergeChannelsAlgorithm
	Merge an image set to another one as additional channel. More...
class	MergeFrameBasedPointCloudsAlgorithm
	Algorithm for merging frame-based point clouds. More...
class	MergeTrackingSequencesAlgorithm
	Merges multiple tracking sequences into a new one. More...
class	MeshDisplayOptions
	DataComponent to store the configuration how meshes should be rendered by default (through MeshDisplayHandler). More...
class	MeshToLabelMapAlgorithm
	Algorithm to perform a voxelization (conversion) of a mesh to a label map. More...
class	MeshToPointCloudAlgorithm
	Algorithm to convert a mesh to a point cloud. More...
class	MinimumBoundingBox
	Algorithm for computing the minimum axis-aligned bounding box from image data. More...
class	Morpho
	Morphological operations (erosion/dilation) in 2D and 3D. More...
class	MorphologicalOperationsAlgorithm
	Algorithm for performing morphological operations on images. More...
class	MotionModel
	Motion model of smooth (modeled by splines) homogenous transformations over time. More...
class	MultiLogisticRegression
	Class for multiple logistic regressions (to be used for multi-label classification). More...
class	Multinomial
class	NestedProgress
	Wrapper class to provide the Progress interface, ensure certain invariants for created tasks and/or optionally forward the progress information to an existing Progress. More...
class	OctreeDataComponent
	DataComponent to store Octrees directly with their SharedImageSet. More...
class	Octree
	Fast Octree space subdivision. More...
class	OpticalFlowAlgorithm
	Algorithm to compute the optical flow along a sequence of images. More...
class	OptimizationStudy
	Holds optimization study results and offers methods for analyzing results. More...
class	Optimizer
	Non-linear optimization. More...
class	OptimizerDiRect
	Global optimizer based on Dividing Rectangles algorithm. More...
class	OptimizerBFGS
	Implementation of the Broyden–Fletcher–Goldfarb–Shanno (BFGS) optimizer. More...
class	OptimizerFactory
	Factory for creating an Optimizer. More...
class	OptimizerNelderMead
	Local optimizer based on Neldea-Mead algorithm (also known as downhill simplex method) (see for instance https://en.wikipedia.org/wiki/Nelder%E2%80%93Mead_method). More...
class	OptimizerReload
	Optimizer that reloads all information from a previously logged file. More...
class	OptimizerNL
	Non-linear optimization using the NLOpt library. More...
class	OptimizerSeries
	Series of multiple sucessive optimizations bundled in one execution. More...
class	OptimizerXNES
	XNES optimizer. More...
class	OptimizerWrapper
	Wrapper around Optimizer and CostFunction classes to work on simple lambda functions. More...
class	OptimizingAlgorithm
	Algorithm class supporting an optimizer. More...
class	OwningDataList
	Wrapper class to store a list of owned Data instances. More...
class	ParameterWrapperBase
	Base class for classes that wish to expose zero or more optimization parameters. More...
class	ParameterOptimization
	Class for combining a ParameterWrapperBase instance with a cost function over C++ objects to produce a CostFunction that can be optimized over with an Optimizer instance. More...
class	ScalarParameterWrapper
	Wrap a single scalar into a ParameterWrapperBase instance. More...
class	VectorParameterWrapper
	Wrap a vector into a ParameterWrapperBase instance. More...
class	MatrixParameterWrapper
	Wrap a matrix into a ParameterWrapperBase instance. More...
class	CombinedParameterWrapper
	Implementation of the ParameterOptimization interface to a combination of other ParameterOptimization interface values. More...
class	AffineRescaledParameterOptimization
	Decorator that subtracts shift, then multiplies by scale to every value before it is passed to the optimizer. More...
class	ParseFolderAndRunWorkspaceAlgorithm
	Algorithm to parse through folder structures and run a workspace on individual files. More...
class	PCA
class	PointCloud
	Data structure for point clouds. More...
class	PointCloudAnalysis
	Geometric analysis of a point cloud. More...
class	PointCorr
	Container for point correspondences. More...
class	PointCorrespondences
	Class that handles point correspondences. More...
class	PointCorrespondencesAlgorithm
	Algorithm for managing and registering point correspondences between two Data instances. More...
class	PointDistanceReg
	Registers a point set to a distance volume. More...
class	PointsOnData
	Interface class for points linked to Data. More...
class	PointsStorageComponent
	Data component for storing and managing point sets. More...
class	PointsOnImage
	Class that hold a list of points on a volume or image. More...
class	PointNode
	Class representing a tree point node. More...
class	PointTree
	Data structure for trees with nodes containing a 3D point. More...
class	Progress
	Generic interface to report operation/computation progress. More...
class	PropertiesInspector
	Small algorithm allowing the user to inspect a Data's properties and DataComponents. More...
class	RANSACPairOfVectorsDataset
class	RANSAC
	This class implements a more generalized form of "Random Sample Consensus" algorithm. More...
class	BestNSelector
class	ReduceToSelection
	Algorithm reducing a SharedImageSet or TrackingSequence to its selected frames/samples. More...
class	Regression
	Abstract base class for regression. More...
class	RemoveUnlabelledImagesAlgorithm
	Algorithm reducing an image data set and its label maps to its labelled frames. More...
class	ReorderLabelValuesAlgorithm
	Stacks fragmented values of a single channel UByte/UShort-typed labelmap inplace into consecutive integer values [0, ..., n]. More...
class	ReplaceValuesAlgorithm
	Replace in-place a set of image values with others values. More...
class	RmseAlgorithm
	Computation of Root Mean Square Error of two SharedImageSets. More...
class	Selectable
	Interface for Data that supports having a Selection. More...
class	Selection
	Utility class for describing a selection of elements out of a set. More...
class	SequentialImageProcessor
	Interface for algorithms that are able to repeatedly process individual images. More...
class	SetGatingMetadataAlgorithm
	Algorithm to compute gating information to an image set. More...
class	SetModalityAlgorithm
	Sets the modality flag of an image data set. More...
class	RemoveModalityAlgorithm
	Remove the modality flag of an image data set. More...
class	SetSpacingAlgorithm
	Sets the spacing of an image data set. More...
class	RemoveSpacingAlgorithm
	Remove the spacing of an image data set. More...
class	SetTimestampsAlgorithm
	Sets the timestamps of an image data set based on a first timestamp and frame rate. More...
class	Settings
	This class provides a way for getting and setting base settings for ImFusionLib. More...
class	Skeletonization
	Skeletonization in 2D and 3D see [Lee TC, Kashyap RL, Chu CN. More...
class	Slice
	Represents a planar bounded slice in 3D space. More...
class	Spline
	Uniform Catmull-Rom spline. More...
class	SplitChannelsAlgorithm
	Splits a single multi channel image into a set of single channel images. More...
class	SplitImageSetAlgorithm
	Algorithm to split an image set into multiple single images. More...
class	SplitImagesAlgorithm
	Algorithm to split images into a set of subimages. More...
class	SquareHoughTransform
	Hough transform for detecting squares. More...
class	SubProgress
	Wrapper class to report partial progress on an existing Task. More...
class	SummedAreaTable
	Class for efficient box average using a summed area table. More...
class	Superpixel
	Class representing a superpixel. More...
class	SuperpixelsAlgorithm
	Algorithm for computing superpixels (SLIC method). More...
class	SuperpixelsFilter
	Algorithm for image filtering guided by superpixels. More...
class	SurfaceRegistration
	Surface registration using a distance volume. More...
class	SyntheticDataAlgorithm
	Creates synthetic data for various test scenarios. More...
class	Table
	A 2D table with named columns, containing strings and numbers. More...
class	TensorBase
	Abstract base class for Tensors. More...
class	TensorFactory
	Factory for creating standard type tensors up to a certain maximum rank. More...
class	TimestampDataComponent
	Data component to record both arrival and device timestamps, intended for element-wise usage. More...
class	TrackedImageSetImFusionFilePlugin
	Plugin for loading tracked image sets via ImFusion files. More...
class	TrackedSharedImageSetPropertiesAlgorithm
	Algorithm to change properties of one or multiple tracked SharedImageSets, or a single TrackingSequence. More...
class	TrackerID
	Class identifying a tracker via a unique ID. More...
class	TrackingInstrument
	Class for information of a tracking instrument. More...
class	TrackingInstrumentRawData
	Device-dependent additional data. More...
class	TrackingInstrumentFiducialsData
	Data component to store raw fiducial locations from optical tracking sequences. More...
class	TrackingSequence
	Sequence of rigid tracking data with optional timestamps, quality values and flags. More...
class	TrackingSequenceDisplayHandler
	DataDisplayHandler for TrackingSequence Data Creates and owns an InteractiveObject comprised of GlTrackingSequence and MeshManipulator. More...
class	TrackingSequenceProcessing
	Basic tracking sequence filtering algorithm. More...
class	TransformationStashDataComponent
	The TransformationStashDataComponent class is a DataComponent that stores transformations. More...
class	Node
	Class representing a tree node. More...
class	Tree
	Data structure for trees. More...
class	TypedNode
	Class representing a typed tree node. More...
class	TypedTree
	Data structure for typed trees. More...
class	TreeFactory
	Tree factory base class. More...
class	DefaultTreeFactory
	Factory for default Tree and Node types. More...
class	UnrestoredDataComponents
	DataComponent containing the configurations of other components that could not be restored during loading. More...
class	VideoFileRecorder
class	BackgroundVideoFileRecorder
class	VitalsDataComponent
	DataComponent for a collection of time dependent vital signs like ECG, heart rate or pulse oximeter measurements. More...
class	VolumeBasedMeshCurvatureAlgorithm
	Algorithm to compute curvature measures (mean curvature, Gaussian curvature, curvedness and shape index) of a mesh based on its implicit surface representation as signed distance volume. More...
class	DataLogger
	Support for logging data. More...
struct	Response
class	Request
	Wrapper around libcurl for simple GET and POST requests WARNING: this is experimental and only available for the LicenseManager for the moment. More...
class	NearestNeighborSearch
	Nearest neighbor search for points. More...
class	ApplyWindowLevelAlgorithm
	Clamps (in-place) the image values to the range [level-window/2; level+window/2]. More...
class	AttachDenseDeformationAlgorithm
	Attaches a displacement field as a GlDenseDeformation. More...
class	BakeDeformationAlgorithm
	Algorithm for baking in an image deformation while adjusting the size to encompass the full deformation. More...
class	BakeDeformationCPU
	Bakes in a deformation applied to an image using the CPU. More...
class	BakeTransformationAlgorithm
	Algorithm for baking in an image transformation while adjusting the size to encompass the full transformation. More...
class	BilateralFilterAlgorithm
	Algorithm for edge-preserving image smoothening using the Bilateral filter. More...
class	Camera
	Abstraction layer to model both intrinsic (projection) and extrinsic (view) parameters of a camera showing a 3D scene. More...
class	CroppingMask
	Simple axis-aligned cropping mask with optional roundness. More...
class	CurvedViewPrimitive
	Interface for curved view primitives. More...
class	DeformationEditor
	The DeformationEditor algorithm modifiers the deformation property of a SharedImageSet. More...
class	DeformationFactory
	Factory singleton for creating Deformations from string IDs. More...
class	DeformationEvent
	Base class for customized deformation events. More...
class	Deformation
	Base class for different kinds of non-linear image transformations. More...
class	EntryExitPointRenderer
	Class for high-performance rendering of entry-exit points to be used for direct volume rendering. More...
class	ExplicitIntensityMask
	An ExplicitIntensityMask is a combination of an ExplicitMask and an IntensityMask. More...
class	ExplicitMask
	An ExplicitMask holds an individual mask value for every pixel. More...
class	ExtractDeformationAlgorithm
	Extracts the displacement field of a deformation as a 3 channel float image. More...
class	GaussianFilter
	Applies a symmetric Gaussian filter to an image. More...
class	Gl3DObject
	Abstract base class for 3D objects for which a center and an extent (i.e. a bounding box) can be specified. More...
class	GlAlgorithmFactory
	Factory for GL algorithms. More...
class	GlAngle
	Angle annotation. More...
class	GlAnisotropicDiffusionFilter
	Anisotropic diffusion filter using the explicit scheme. More...
class	GlAnnotation
	Base class for implementing annotations. More...
class	GlAnnotationFactory
class	GlArrow
	Line segment annotation. More...
class	GlAxis
	Cut Line annotation. More...
class	GlBall
	Ball annotation, based on GlCircle annotation (basically three circles in 3 orientations). More...
class	GlBilateralFilter
	Bilateral Filter from Szeliski's Computer vision. More...
class	GlBoundingBox
	Draws a bounding box. More...
class	GlBox
	Bounding box annotation. More...
class	GlCircle
	Circle annotation. More...
class	GlColormap
	Wrapper around GlImage to create 1D look-up tables that provides presets for common used colormaps. More...
class	GlConvolutionFilter
	Convolution filter. More...
class	GlCoordinateSystem
	GlObject to render an illustration of a coordinate system into the scene. More...
class	GlCrosshair
	Renders a crosshair as two symmetrical and orthogonal lines, with a gap in the center with a given length. More...
class	GlCurvedViewCircle
	Circle annotation for curved views. More...
class	GlCurvedViewEllipse
	Ellipse annotation for curved views. More...
class	GlCurvedView
	Curved slice view. More...
class	GlCurvedViewPolyLine
	Polyline annotation for curved views. More...
class	GlCurvedViewSpline
	Spline annotation for curved views. More...
class	GlCurve
	Spline annotation. More...
class	GlCutLine
	Cut Line annotation. More...
class	GlObjectFactory
	Factory singleton for creating GlObject from string IDs. More...
class	GlDenseDeformation
	The GlDenseDeformation class represents dense deformations based on a displacement map. More...
class	GlDepthDarkening
	Implementation of the Depth Darkening technique for a simple screen-space ambient occlusion effect. More...
class	GlEdgeFilter3D
	3x3x3 Sobel edge filter for 3D images More...
class	GlEdgeFilter
	3x3 Sobel edge filter for 2D images More...
class	GlEllipse
	Ellipse annotation. More...
class	GlExtractSlice
	Extract slice from 3D volume. More...
class	FreeFormDeformation
	The FreeFormDeformation provides deformations using a free-form deformation (FFD) based on B-splines. More...
class	GlFilterChain
	Chain of two GlFilters. More...
class	GlFilter
	Base class for filters. More...
class	GlFilterSet
	Processing multiple images with a standard filter. More...
class	GlFlattenTrackingDeformation
	Deformation model based on flattening a tracking sequence. More...
class	GlFpsOverlay
	Overlay showing a basic FPS counter inside an InteractiveView. More...
class	GlFreeFormDeformation
	Free Form Deformation. More...
class	GlFreeform
	Freeform annotation. Draw whatever you want. More...
class	GlGradient
	Computes the gradient of an image in pixel coordinates. More...
class	GlGrid
class	GlGuidedFilter
	Guided Filter from the paper by He et al. More...
class	GlHistogram
	Provides an interface to calculate the histogram of an image either on the CPU or on the GPU. More...
class	GlIcon
	Renders an icon as a billboard in world space The icon will be rendered always looking towards the camera, without depth test The position is set with setWorldPosition or GlObject::setMatrix. More...
class	GlImage
	OpenGL texture image. More...
class	GlImageIntensifierAngleOverlay
	Text overlay representing the current view's matrix in the form of image intensifier angles, for instance "RAO -3.3, CAU -51.5". More...
class	GlImageMetric
	Computation of standard metrics on a 2D or 3D image. More...
class	GlImageHighlighter
	GlObject that highlights an image by drawing a colored layer on top of it. More...
class	GlImageParameters
	Set texture parameters for the lifetime of the object and then restore old parameters. More...
class	GlImageRenderer
	GlObject to render an image into a GlSliceView. More...
class	GlInfiniteLine
	Line annotation. More...
class	GlIntensityNormalizedSmoothedGradient
	Gradient relative to image intensity smoothed with a constant kernel. More...
class	GlJointHistogram
	Provides an interface to calculate the joint histogram of an image either on the CPU or on the GPU. More...
class	GlLiftChartOverlay
	Overlay displaying a LIFT chart. More...
class	GlLine
	Line segment annotation. More...
class	GlLoop
	Loop annotation. More...
class	GlLocalExtremalFilter
	Local extremal Filter. More...
class	GlMask
	Base interface for implementing polymorphic image masks using OpenGL. More...
class	GlMedianFilter
	Median Filter. More...
class	GlMesh
	The GlMesh class renders Mesh instances in 2D and 3D. More...
class	GlNoiseFilter
	Filter which adds noise. More...
class	GlObject
	Abstract base class for an renderable OpenGL object that can be hosted in a GlView. More...
class	GlOffscreenIndicatorsOverlay
	The GlOffscreenIndicatorOverlay provides indicators to data that is outside of the current view area. More...
class	GlOrientationMeshOverlay
	The GlOrientationMeshOverlay class draws an overlay that shows the current camera orientation of a view on a proxy mesh. More...
class	GlOutlineRenderer
	Light-weight wrapper to render a colored outline around any rendered GlObject. More...
class	GlCurvedViewOrthoSlice
	Displays an ortho slice for a panorama curve. More...
class	GlOverlay
	Abstract base class for OpenGL overlays. More...
class	GlOvershootControlFilter
	Overshoot control for sharpening algorithms, as used in ADSOC. More...
class	GlPainter
class	GlParallelogram
	Parallelogram annotation. More...
class	GlPlane
	Plane Annotation. More...
class	GlPlotView
	View for plotting data. More...
class	GlPointBasedAnnotation
	Base class for implementing point-based annotations. More...
class	GlImplicitlyPlanarPointBasedAnnotation
	Interface extension for point-based annotations that span an area despite consisting of only 2 points. More...
class	GlPointCloud
	Efficient point cloud renderer. More...
class	GlPoint
	Point annotation. More...
class	GlPointTree
	Point tree annotation. More...
class	GlPolarToCartesian
	Converts data from polar coordinate to Cartesian space, with constant degree between polar lines. More...
class	GlPolyLine
	Line annotation. More...
class	GlPoseGraph
	Pose graph annotation. More...
class	GlProgramIncludeManager
	Helper class to manage instances of the same base shader with different abstract includes and/or defines. More...
class	GlRectangle
	Rectangle annotation. More...
class	GlRectangleBillboard
	Renders a fixed size rectangle billboard in the world, always facing towards the camera. More...
class	GlReduction
	High-performance implementation of a reduction of 2D and 3D images using OpenGL. More...
class	GlMinReduction
	Specialization of GlReduction performing a ReductionOperator::MIN reduction. More...
class	GlMaxReduction
	Specialization of GlReduction performing a ReductionOperator::MAX reduction. More...
class	GlAverageReduction
	Specialization of GlReduction performing a ReductionOperator::AVERAGE reduction. More...
class	GlSumReduction
	Specialization of GlReduction performing a ReductionOperator::SUM reduction. More...
class	GlProductReduction
	Specialization of GlReduction performing a ReductionOperator::PRODUCT reduction. More...
class	GlRotationTransformer
class	GlScalarBarOverlay
	Overlay for displaying one or multiple named scalar values represented as colored bars. More...
class	GlScreenSpaceAmbientOcclusion
	Post-processing filter implementing Screen Space Ambient Occlusion (SSAO). More...
class	GlSeparableConvolutionFilter
	Separable Convolution filter. More...
class	GlSharpenFilter
	Unsharp Mask filter. More...
class	GlSlice
	Represents an MPR slice for rendering Data into 2D views. More...
class	GlSliceIndicator
	Renderer to show the position/orientation of GlSlice instances in context of other Views. More...
class	GlSliceRenderer
	Interface for a class that can render data into a GlSlice/GlSliceView. More...
class	GlSliceRendererImage
	Enables GlSlice to render normal images/volumes (SharedImageSet). More...
class	GlSliceView
	OpenGL view for 2D slice rendering of one or multiple images and GlObjects. More...
class	GlSmartSpline
	Intelligent spline annotation. More...
class	GlSmoothingFilter
	Gaussian smoothing filter. More...
class	GlSpline
	Spline annotation. More...
class	GlTexelFetch
	Read single intensity values from an OpenGL texture. More...
class	GlText
class	GlTextOverlay
	Renderer for displaying text as view overlay. More...
class	GlTPSDeformation
	The GlTPSDeformation class provides deformations using a thin-plate splines (TPS). More...
class	GlTrackingSequence
	Render-class for a TrackingSequence. More...
class	GlTrackingSequenceLegacy
class	GlTransformerObject
class	GlAxisTransformerObject
class	GlTranslationTransformer
class	GlInPlaneTransformer
class	GlTree
	Point tree annotation. More...
class	GlVesselnessFilter
	Computes a multi-scale vesselness measure based on Frangi's filter. More...
class	GlView
	Base class for implementing OpenGL views. More...
class	GlVitalsOverlay
	Overlay illustrating the ECG and other vitals data signals together with the current focus frame. More...
class	GlVolumeCompounding
	Compounding of multiple volumes (SharedImageSets) with different modalities for the computation of the resulting voxel values (Mode): Mean, Median, Maximum, and Distance. More...
class	GlVolumeRendererBasic
	Basic implementation of a direct volume renderer that supports different compositing modes. More...
class	GlVolumeRendererGlobalIllum
	GlVolumeRenderer that supports global illumination in terms of shadows and local ambient occlusion. More...
class	GlVolumeRenderer
	Interface for a class that can render volumetric data into a GlVolumeView. More...
class	GlVolumeView
	OpenGL view for 3D rendering and correct compositing of direct volume rendering and classic geometry-based GlObjects. More...
class	GlXClaheFilter
	XClahe filter. More...
class	ImagePyramid
	Represents a pyramid of images with decreasing resolution. More...
class	IntensityMask
	Masks pixels with a specific value or values outside a specific range. More...
class	InteractiveCroppingBox
class	IntraOralFilter
	Intra-oral filter. More...
class	InvertDeformationAlgorithm
	Algorithm to compute the inverse of a deformation. More...
class	LinkPoseDeformable
	Links the pose of two or more data instances if there is deformation present. More...
class	MaskEditor
class	MatchWindowingAlgorithm
	Algorithm for matching window/level between two images. More...
class	OptimizeParametricDeformationAlgorithm
class	ParametricDeformation
	Base interface for a parametric deformation in 2D or 3D. More...
class	ParametricDeformationOptimizer
	Runs a non-linear optimization on a ParametricDeformation in order to match its deformation to a given reference displacement field. More...
class	PointCorrAlgorithm
	Algorithm for defining point correspondences on a pair of images. More...
class	Radon2D
class	RendererFactory
	Static factory class to manage registered slice and volume renderers to be used in views. More...
class	RollingGuidanceFilterAlgorithm
	Algorithm for Rolling Guidance Filtering. More...
class	SharedImage
	Image shared on multiple devices. More...
class	SharedImageSet
	Set of images independent of their storage location. More...
class	SkippingMask
	Basic mask where only every N-th pixel is considered inside. More...
class	PointCorrespondencesVisualGuide
	This class calculates visual guides to assist in identifying corresponding points between different modalities. More...
class	SplineSlicingAlgorithm
	Creates slices orthogonal to a spline and exports them to an image set. More...
class	SynchronizeMemGlAlgorithm
	Manually synchronize CPU and OpenGL copies of an image. More...
class	TrackedSharedImageSet
	Set of images with arbitrarily sampled tracking data. More...
class	TransferFunction
	Modern 1D transfer function for classification during rendering. More...
struct	TransferFunctionFactory
	Collection of factory functions for transfer function presets. More...
class	TransferFunctionTissue
	Describes a single tissue of a transfer function. More...
class	VectorFieldFlow
	Class for computing solutions to (autonomous) ordinary differential equations (ODEs) Currently only supports the classical 4th-order explicit Runge-Kutta method with fixed stepsize. More...
class	VectorFieldFlowAlgorithm
	Algorithm for computing solutions to (autonomous) ordinary differential equations (ODEs). More...
class	BackgroundExporter
	Writing data files into disk in a background thread. More...
class	BackgroundFrameExporter
	Writes frame data to the disk in a background thread. More...
class	BinaryMaskToTextAlgorithm
	Algorithm for loading and exporting a binary mask from a text file. More...
class	CsvIoAlgorithm
	IO algorithm for moving tensors to and from CSV files. More...
class	DefaultIoAlgorithmFactory
	Factory for built-in IO algorithms. More...
class	FrameBasedPointCloudIoAlgorithm
	Algorithm for reading and writing frame-dependent point clouds. More...
class	ImageIoAlgorithm
	Algorithm for reading and writing all supported 2D image formats. More...
class	ImageSetIoAlgorithm
	Algorithm for reading all 2D images in a directory into an image set. More...
class	ImFusionFileIoAlgorithm
	IoAlgorithm to for the ImFusionFile format. More...
class	InterfileIoAlgorithm
	IoAlgorithm for loading and saving images stored in Interfile format. More...
class	MeshIoAlgorithm
	Algorithm for reading and writing meshes. More...
class	MetaImageIoAlgorithm
	Algorithm for reading and writing MetaImage files. More...
class	MincIO
	Class for reading and writing MINC images. More...
class	NiftiIO
	Class for reading and writing Nifti images. More...
class	NiftiIoAlgorithm
	Algorithm for reading and writing NIFTI data. More...
class	NrrdIoAlgorithm
	Algorithm for reading NRRD images. More...
class	PgmIO
class	PointCloudIoAlgorithm
	Algorithm for reading and writing point clouds. More...
class	RawImageIoAlgorithm
	Algorithm for reading and writing raw image data. More...
class	TensorIoAlgorithm
	IO algorithm for moving tensors to and from binary files. More...
class	TrackingSequenceIO
	IO class to (de)serialize TrackingSequence objects. More...
class	TreeIoAlgorithm
	Algorithm for reading and writing trees. More...
class	VideoIoAlgorithm
	Algorithm for reading video files as image set, and writing them. More...
class	UnpackVideoIoAlgorithm
	Derived class for different factory name when reading. More...
class	VideoFileIoAlgorithm
	Derived class for different factory name when writing. More...
class	ZipIoAlgorithm
	Loads data from a ZIP archive. More...
class	HDF5IoAlgorithm
	Algorithm for reading HDF5 files. More...
class	JpegIO
	Class for reading and writing JPEG images. More...
class	TiffIO
	Class for reading and writing TIFF images. More...
class	PngIO
class	AlgorithmBrowserDialog
	Qt dialog showing a list of compatible Algorithms and enables the user to navigate and execute them. More...
class	AlgorithmController
	Specialization of the Controller interface to be used with Algorithm instances. More...
class	AnatomyController
	Controller for AnatomyAlgorithm. More...
class	AnnotationModel
	Container class for annotations Each annotation is always related to exactly one dataset. More...
class	AnnotationOutputInterface
	Interface for passing annotations from an algorithm to the DefaultAlgorithmController. More...
class	AnnotationPoseLink
	Links the pose and deformation of a point-based annotation to a dataset. More...
class	AnnotationWidget
	Qt User interface for editing annotations managed by AnnotationModel. More...
class	ApplicationController
	The basic ApplicationController provides essential interfaces of the SDK but no graphical user interface. More...
class	BaseAlgorithmControllerFactory
	Factory for built-in algorithms. More...
class	BasicImageProcessingController
	Controller for basic image processing tasks. More...
class	BoxAnnotationManipulator
	Manipulator for box annotations. More...
class	CameraNavigation
	Helper class to manipulate a 3D Camera using classic metaphors such as zoom, pan, etc. More...
class	CleanDecorator
class	CleanMeshWidget
	Mesh clean widget. More...
class	ColorDecorator
class	ColorMeshWidget
class	ConsoleController
	Specialization of ApplicationController for a console application which loads data and runs algorithms. More...
class	Controller
	Base interface for a GUI element within MainWindowBase. More...
class	ControllerDecorator
	Base interface for wrapper classes to decorate Controller instances and place them inside a MainWindowBase. More...
class	CropDecorator
class	CropMeshWidget
class	DefaultControllerDecorator
	Wrapper class to decorate Controller instances and place them in the GUI of MainWindowBase using Qt Widgets. More...
class	DisplayRecorderController
class	Gated4DImageSetDisplayDataController
	GUI controller for synchronizing multiple 4D datasets through gating metadata. More...
class	VolumeBasedMeshCurvatureController
class	CSVParser
	Converts a CSV file into a Table, with customizable delimiters and optional headers. More...
class	CSVParseDialog
struct	TrackingSequenceTableParameters
class	TrackingSequenceTableDialog
class	CurvedView
	Interactive 2D view of one or multiple images. More...
class	CurvedViewSettingsController
	Simple dialog to modify parameters of the curved view. More...
class	CurvedViewSplineManipulator
	Manipulator setting the direction of spline based curved views. More...
class	CurveEditorManipulator
class	CurveEditorView
	Curve editor view. More...
class	DataController
	Specialization of the Controller interface to be used with Data instances. More...
class	DataControllerBar
	The DataControllerBar displays DataController in toolbar-mode. More...
class	DataDisplayHandlerFactory
	Factory class to maintain the list of registered DataDisplayHandlers ,. More...
class	DataDisplayHandler
	Interface to generically show/hide Data in a GUI::View and/or query visibility. More...
class	DataDisplayModel
	This class extends a DataItemModel with data visibility information from a DisplayWidgetMulti. More...
class	DataFilterModel
	The DataFilterModel class is a proxy model to filter a DataItemModel. More...
class	DataGroupingModel
	QAbstractProxyModel implementation that groups data in a source-model according to a specified GroupingOption. More...
class	DataItemModel
	Wrapper class to transform the DataModel into a QAbstractItemModel so that it can be used in Qt views. More...
class	DataMatrixTransformer
class	DataWidget
	Graphical user interface for the DataModel/DataItemModel. More...
class	DataWidgetItemDelegate
	Base interface for a Qt item delegate that defines how the entries in a DataWidget are supposed to be shown. More...
class	DefaultDataWidgetItemDelegate
	Default implementation of the DataWidgetDelegate that is used for instance in the ImFusion Suite. More...
class	DataWidgetMenu
	Context menu of the DataWidget. More...
class	Debouncer
	Class that can be used to limit the frequency of calls to a function. More...
class	DecimateMeshWidget
	Mesh decimation widget. More...
class	DefaultAlgorithmController
	Default algorithm controller, with automatically generated GUI This GUI includes: A PropertiesWidget displaying the configurable properties of the Algorithm A push-button for each Algorithm::Action registered with the algorithm (see Algorithm::registerAction). More...
class	DefaultDataAnnotationFactory
	Factory for default data annotations. More...
class	DefaultIoAlgorithmControllerFactory
	Factory for built-in IO algorithm controllers. More...
class	DeformationEditorController
	Controller for the DeformationEditor algorithm. More...
class	DeformationWidget
	Widget representing the properties of a certain deformation model. More...
class	DisplayOptions2dWidget
	Widget to display and manipulate the per-data rendering options of a 2D view. More...
class	DisplayOptions3dWidget
	Widget to display and manipulate the per-data rendering options of a 3D view. More...
class	DisplayWidget
	Render surface that hosts InteractiveViews and will call their render method on repaints. More...
class	DisplayWidgetMulti
	Specialized version of DisplayWidget that manages specific views and provides an automatic layout. More...
class	InteractiveViewAdapter
	Helper class providing the API of InteractiveView while wrapping around either a InteractiveView or a GUI::View. More...
class	ImageView2DAdapter
	Helper class providing the API of ImageView2D while wrapping around either a ImageView2D or a GUI::SliceView. More...
class	ImageView3DAdapter
	Helper class providing the API of ImageView3D while wrapping around either a ImageView3D or a GUI::VolumeView. More...
class	ViewGroupAdapter
	Helper class providing the API of ViewGroup while wrapping around either a ViewGroup or a GUI::RadiologyViewGroup. More...
class	DisplayWidgetMultiAdapter
	Helper class providing the API of DisplayWidgetMulti while wrapping around either a DisplayWidgetMulti or a GUI::RadiologyDisplay. More...
class	ExpandableGroupBoxButton
class	ExpandableGroupBox
	This class is a container widget that can expand and collapse another widget. More...
class	ExpandableWidget
	This class is a container widget that can expand and collapse another widget. More...
class	FilterController
	GUI controller for 2D filtering with preview. More...
class	FreeformAnnotationManipulator
	Manipulator for freeform annotations. More...
class	GlAlgorithmControllerFactory
	Factory for built-in algorithms. More...
class	GlContextQt
	OpenGL context using Qt as backend. More...
class	GlPlotLegend
	Display legend of a plot view as an overlay Color and marker styles replicate the plot style, however, in the text form instead of graphic renders. More...
class	HistogramInteraction
	Implements mouse interaction logic for the InteractiveHistogramOverlay. More...
class	ImageResamplingController
	Controller for image resampling. More...
class	ImageStatisticsController
class	ImageView2D
	High-level wrapper class for 2D/MPR rendering of one or multiple images. More...
class	ImageView3D
	Qt widget for 3d rendering of one or multiple images. More...
class	ImFusionFileIoController
	Dialog for adjusting image compression settings. More...
class	Interaction3D
	Standard 3D view interaction. More...
class	Interaction
	Base interface class for view and overlay interactions. More...
class	InteractionOrthoView2D
	Ortho 2D view interaction. More...
class	InteractionPlotView
	Interaction class for plot view. More...
struct	TouchActions
	Specifies actions with one-finger and two-fingers gestures. More...
class	InteractionView2D
class	InteractionView3D
	Standard 2D/3D view interaction. More...
class	InteractiveAnnotation
class	InteractiveButtonOverlay
	Interactive overlay for a click-able button. More...
class	Interactive
	Strongly typed templated version of an InteractiveObject. More...
class	InteractiveHistogramOverlay
	Wraps a GlHistogramOverlay object (that contains a GlHistogram) in an InteractiveOverlay. More...
class	InteractiveObject
	Wraps a GlObject pairing it with an optional Manipulator in order to attach it to an InteractiveView. More...
class	InteractiveOrientationMeshOverlay
	The InteractiveOrientationMeshOverlay class wraps a GlOrientationMeshOverlay and does not provide any interactions. More...
class	InteractiveOverlay
	Wraps a GlOverlay in order to display it at specific positions in an InteractiveView. More...
class	InteractiveScaleOverlay
	Wraps a GlScaleOverlay. More...
class	InteractiveView
	Abstract base class for a view that can be hosted by a DisplayWidget. More...
class	InteractiveViewOptionsOverlay
	Button overlay for InteractiveView that allows for setting up the view or display options of the view. More...
class	IoController
	Controller for image IO. More...
class	KeyboardShortcutManager
	Singleton class to manage global keyboard shortcuts. More...
class	LabelDataComponentWidget
	Widget to display and manipulate the per-data rendering options of a 3D view. More...
class	LightweightController
	Interface to set a display instance on a Controller or DataController class. More...
class	LiftChartOverlayAlgorithm
class	LiftChartOverlayController
	Controller with a dummy algorithm. More...
class	LabelResizeHandler
class	LinkPoseDeformableController
	Default algorithm controller for LinkPoseDeformable algorithm, with a slight modification to have GlMesh access. More...
class	LoadRawDialog
	Dialog for loading raw files, conveniently figuring out dimensions and settings. More...
class	LoadUnknownDialog
	Dialog for opening files without specified type. More...
class	LogWidgetOptions
class	LogViewerWidget
	Logging sink that manifests itself as a Qt widget showing formatted log messages and allowing for basic filtering. More...
class	LoopManipulator
class	MainWindowBase
	Extends ApplicationController with additional interfaces for graphical user interfaces. More...
class	ManipulatorListener
	Interface for manipulator events. More...
class	Manipulator
	Abstract base class for manipulator objects. More...
class	MaskEditorController
class	MatrixParameterDialog
	Dialog to host a MatrixParameterWidget. More...
class	MatrixParameterWidget
	Widget containing a transformation matrix widget and a transformation stash. More...
class	MeshDataController
	GUI controller for adjusting visualization of meshes. More...
class	MeshDistanceController
	Controller for the MeshDistanceAlgorithm. More...
class	HistogramDisplayWidget
	Qt Widget for displaying and manipulating a histogram from MeshDistanceController. More...
class	MeshPickingManipulator
	Mesh picking manipulator The MeshPickingManipulator can return the list of selected vertices/faces/edges It offers several manipulation modes like double-click, hover, alt + mouse key press For proper use the MeshPickingManipulator object must be added to a view as mesh manipulator and the outer object should subscribe to its signals e.g. More...
class	MeshManipulator
	Mesh manipulator with 3d controls. More...
class	OptimizationDialog
class	OverlayInteraction
	Base class for all overlay interactions. More...
class	ParseFolderAndRunWorkspaceAlgorithmController
	Controller for the algorithm parsing folders and running a workspace on them. More...
class	PlotView
	View for plotting data. More...
class	PointBasedAnnotationManipulator2
	Manipulator for point-based annotations. More...
struct	PointBasedAnnotationManipulatorEventData
	Struct passed as event data to manipulator event. More...
class	PointBasedAnnotationManipulator
	Manipulator for point-based annotations. More...
class	PointCloudAnalysisController
	Controller for point cloud analysis. More...
class	PointCloudPickingManipulator
	Point cloud picking manipulator The PointCloudPickingManipulator can return the list of selected vertices The supported manipulation is alt + mouse key press with optional dragging. More...
class	PointCorrespondenceController
	Controller for defining point correspondences. More...
class	PointCorrespondencesController
	Controller for defining point correspondences. More...
class	PointCorrespondencesWidget
	Widget that displays point correspondences in a table with buttons that allows to add and remove correspondences. More...
class	PointsOnDataManipulator
	Interface class that handles creation and manipulation of points on Data. More...
class	PointsOnImageManipulator
	Class that handles creation and manipulation of points on a volume or image. More...
class	PopupMenuButton
	Extension of a QToolButton to which you can add a drop-down menu. More...
class	ProgressDialog
	QDialog-based progress reporter that shows one QProgressBar for each progress task. More...
class	PropertiesListWidget
	The PropertiesListWidget shows as sub-properties as a list. More...
class	PropertiesWidget
	The PropertiesWidget class provides a widget for Properties. More...
class	ParamControl
	Base class for parameter controls. More...
class	LabeledParamControl
	Composite control that wraps an existing ParamControl and adds a label to the left of it. More...
class	OptionalParamControl
	Composite control that wraps an existing ParamControl and adds a checkbox to the left of it. More...
class	StringParamControl
	Represent a ParamType::String with a QLineEdit. More...
class	TextParamControl
	Represent a ParamType::String with a QTextEdit. More...
class	IntegerParamControl
	Represent a ParamType::Integer with a QSpinBox. More...
class	IntegerAdjusterParamControl
	Represent a ParamType::Integer with a IntAdjusterWidget. More...
class	DoubleParamControl
	Represent a ParamType::Double with a QDoubleSpinBox. More...
class	DoubleAdjusterParamControl
	Represent a ParamType::Double with a DoubleAdjusterWidget. More...
class	BoolParamControl
	Represent a ParamType::Bool with a QCheckBox. More...
class	EnumParamControl
	Represent a ParamType::Enum and ParamType::EnumString with a QComboBox. More...
class	PathParamControl
	Represent a ParamType::Path with a QLineEdit and a QToolButton that opens a file dialog. More...
class	ColorPickerParamControl
	Represent a ParamType::Vector with a QPushButton that displays the vector as a color and opens a QColorDialog on click. More...
class	MatrixParamControl
class	EigenMatrixParamControl
	ParamControl for Eigen Types (Properties::ParamType::Matrix and Properties::ParamType::Vector). More...
class	QDebugAppender
class	QtAuthorizationProvider
	AuthorizationProvider that shows a Qt LoginDialog. More...
class	QtKeyCanceller
class	RecentFileWidget
	Qt Widget to display recent files. More...
class	RecentFilesMenu
	QtMenu that displays recent files and favourites. More...
class	RemoveEdgesWidget
	Remove edges widget. More...
class	SharedImageSetDisplayHandler
	Shows regular SharedImageSet instances (no derivatives) in ImageView2D and ImageView3D. More...
class	SectionWidget
	The SectionWidget provides a way to group widgets in vertical sections. More...
class	SelectFileTypeDialog
	Dialog for opening files without specified type. More...
class	SelectionScrollBar
	Custom scrollbar to visualize data selection. More...
class	SelectionWidget
	Widget and scrollbar for handling selection and playback of data. More...
class	SetModalityController
	Controller for setting the modality flag of an image data instance. More...
class	SettingsDialog
	Presents a GUI dialog to configure the global settings. More...
class	SliceManipulator
	Interaction for slices. More...
class	SliceIndexOverlay
	Renders the current slice number and total slices of the first data in the assigned view eg. More...
class	SmartSplineManipulator
	Manipulator for smart spline annotations. More...
class	SmoothMeshWidget
	Smooth mesh widget. More...
class	SplineSlicingController
	Minimal controller for spline slicing algorithm. Required to get spline. More...
class	TableQModel
class	ThumbnailManager
	The ThumbnailManager class generates and manages thumbnails for data instances. More...
class	TrackedSharedImageSetDisplayDataController
	GUI controller for adjusting TrackedSharedImageSet visualization. More...
class	TrackedSharedImageSetProperties
	Dialog for adjusting properties of a tracked shared image set. More...
class	TrackedSharedImageSetPropertiesLegacy
	Dialog for adjusting properties of a tracked shared image set. More...
class	TrackingSequenceDisplayOptionsWidget
class	TransferFunctionDisplayWidget
	Qt Widget for displaying an overview of a transfer function and providing basic interaction. More...
class	TransferFunctionWidget
	Widget for setting up a transfer function. More...
class	TransformationModifierDialog
	Shows the MatrixParameterDialog to edit a transformation matrix. More...
class	TransformationMatrixWidget
	Widget to transform a matrix, with global/local and toWorld/fromWorld modifiers. More...
class	ViewGroup
	Non-owning container of multiple views that share and sync properties with each other. More...
class	ViewInteraction
	Base class for all view interactions. More...
class	ViewInteractionSettings
	Class responsible for serializing and deserializing ViewInteraction::viewActionMapGlobal.
class	ViewLayoutWidget
	The ViewLayoutWidget class provides controls to show/hide views and change the layout. More...
class	WindowToSelection
	Utility class to handle the event loop of the window-to-selection feature. More...
class	Workspace
	Workspaces allow for restoring a session or automate the execution of a series of data loading and algorithms in a similar fashion as scripting. More...
struct	WorkspaceConversionFunction
	Structure to describe a conversion of workspace files between different versions. More...
class	WorkspaceConversionRegistry
	Singleton to manage registered workspace conversion functions and apply them to workspace file. More...
class	WorkspacePlaceholdersDialog
	Dialog allowing the user to specify missing values for workspace placeholders. More...
class	ZipFileHandler
	Automatically extracts a ZIP archive to a temporary folder for loading. More...
class	PlottingAlgorithm
class	PlottingAlgorithmController
class	AdjusterWidgetBase
	Base class for widgets providing two ways of adjusting numeric values. More...
class	IntAdjusterWidget
	Widget combining a slider with a spin box for configuring integer values. More...
class	DoubleAdjusterWidget
	Widget combining a slider with a spin box for configuring integer values. More...
class	ButtonDropdownWidget
	Push button and a dropdown menu together as a single widget. More...
class	ColorButton
	Specialization of a QPushButton to show and select a color. More...
class	ColorPickerWidget
	Widget combining a HsvColorPicker2d, an HsvHueSlider, and optionally an OpacitySlider to let the user pick a color. More...
class	HsvColorPicker2d
	QWidget allowing for selecting 2 components of the HSV color space. More...
class	CompositeSlider
	QSlider which adds the possibility of painting a background for the slider. More...
class	HsvHueSlider
	Specialized version of a CompositeSlider that renders the HSV hue color map as background. More...
class	OpacitySlider
	Specialized version of a CompositeSlider that renders a checkerboard blended with the given color as background. More...
class	ItemControl
	ItemControl abstract interaface. More...
struct	ListModelView
	Represents a QListView, and the container ItemViewWidget. The model can be accessed in ItemViewWidget::model or QListView::model. More...
struct	TableModelView
	Represents a QTableView, and the container ItemViewWidget. The model can be accessed in ItemViewWidget::model or QTableView::model. More...
class	ItemViewWidget
	Widget containing an abstract item view, reprensenting a model, as well as configurable options to edit the model. More...
class	LabeledSlider
	This class wraps a QSlider and two QLabels. More...
class	RecentItemsTableWidget
	This widget is a table showing a list of items recently used. More...
class	Vec3Widget
	Widget to represent a vec3 type. More...
class	ClCommandQueue
	OpenCL command queue class. More...
class	ClContext
	OpenCL context class. More...
class	ClDevice
	OpenCL device class. More...
class	ClEnvironment
	Encapsulates OpenCL environment. More...
class	ClEvent
	OpenCL event class. More...
class	ClFastMarching
	OpenCL Fast Marching implementation. More...
class	ClFftAlgorithm
	Algorithm interface of the Fast Fourier Transform using the ClFFT library. More...
class	ClFourierTransform
	OpenCL-based Fast Fourier Transform using the ClFFT library. More...
class	ClImage
	OpenCL image class. More...
class	ClKernel
	OpenCL kernel class. More...
class	ClPlatform
	OpenCL platform class. More...
class	ClPointCloud
	OpenCL point cloud. More...
class	ClPointDistanceReg
	Registers a point set to a distance volume. More...
class	ClProgram
	OpenCL program class. More...
class	ClReduction
	OpenCL-based reduction based on the NVIDIA OpenCL reduction SDK sample. More...
class	ClSort
	OpenCL-based sorting. More...
class	ClMarkovChain
	OpenCL-based Viterbi algorithm. More...
class	CubicSplineInterpolationAlgorithm
class	ImageMattingAlgorithm
	Algorithm for image matting using guided filter. More...
class	Measuring
	Measure primitives from 2D and 3D volume. More...
class	PythonPlugin
	Enables Python bindings for the ImFusionLib. More...
class	PythonSettings
	Settings for the Python plugin. More...
class	ActiveEnvironmentControl
	A QComboBox with additional add and remove button to change the entries. More...
class	PythonInterpreterInterface
	Interface for the embedded PythonInterpreter that prevents linking to an explicit Python version. More...
class	PythonInterpreter
	Starts an embedded Python interpreter and provides factories for registering algorithms from Python. More...
class	DicomIoAlgorithm
	IoAlgorithm for reading and writing DICOM files. More...
class	DicomIOAlgorithmFolder
class	DicomIOAlgorithmFile
class	DicomIOAlgorithmBrowser
class	DicomLoader
	The DicomLoader class loads images from DICOM files. More...
struct	DicomPacsConfiguration
	Structure encapsulating all information needed to connect to a PACS instance. More...
class	DicomPacsCommunication
	Class facilitating the communication with DICOM PACS servers. More...
class	DicomAlgorithmFactory
class	DicomDataAnnotationFactory
class	DicomPlugin
class	DicomPluginSettings
	Provides settings used by different parts of the DicomPlugin. More...
class	DicomWriter
	The DicomWriter class can store a SharedImageSet in a DICOM dataset. More...
class	LabelMapToRTStructure
	Converts a LabelMap to RTStructures. More...
class	NuclearMedicineImageIOD
	PS 3.3 A.5 Nuclear Medicine Image IOD Does not support saving yet. More...
class	PhilipsQLabIOD
	Loads ultrasound volume stored by Philips QLab software. More...
class	RTStructureAnnotation
	Annotation that renders a PointCloud with a RTStructureDataComponent. More...
class	RTStructureToLabelMap
	Algorithm to convert a PointCloud with a Dicom::RTStructureDataComponent datacomponent to a labelmap. More...
class	DicomBrowser
	The DicomBrowser is a dialog to browse and preview DICOM files. More...
class	DateFilterWidget
class	DicomBrowserFilterModel
	A QSortFilterProxyModel specifically for a DicomBrowserModel. More...
class	DicomBrowserModel
	Hierarchical model of DICOM patients. More...
class	DicomIoController
class	DicomGuiAlgorithmFactory
class	DicomAlgorithmControllerFactory
class	DicomGuiPlugin
class	RTStructureToLabelMapController
	Controller that allows to select a reference volume for the RTStructureToLabelMap algorithm. More...
struct	TimestampedPayload
	Helper struct uses as container for the BackgroundThreadQueue data elements. More...
class	BackgroundThreadConsumer
	Interface for BackgroundThreadQueue holders to implement. More...
class	BackgroundThreadQueue
	Queue for thread-safe asynchronous management of some payload data as needed in most streaming classes. More...
class	BasicProcessingStream
	Apply basic filters to the content of an incoming ImageStream. More...
class	CompoundStreamData
	Container for StreamData from the individual Streams of a StreamGroup. More...
class	CreateStreamAlgorithm
	Algorithm template to create streams. More...
class	CreateStreamIoAlgorithm
	IO algorithm template to create streams. More...
class	FakeImageStream
	Small tool class to create an image stream. More...
class	FakePolyDataStream
	Fake stream emitting a moving PointCloud or Mesh. More...
class	FakeTrackingStream
	Small tool class to create a tracking stream out of nowhere. More...
class	ImageOutStream
	Image stream which is sent by an OutputConnection through network or other ports. More...
class	ImageStream
	Specialization of Stream for streams producing 2D or 3D images. More...
class	ImageStreamCache
	A singleton class for caching the output of an ImageStream in a SharedImageSet. More...
class	StreamSharedImageSet
	Wrapper around a streamed SharedImageSet. More...
class	ImageStreamData
	Image data streamed from a streaming device. More...
class	ImageStreamRecorder
	Records images from an ImageStream. More...
class	ImageTemplateMatchingAlgorithm
	Manages a list of image templates for a given ImageStream. More...
class	InstrumentCalibrationDataComponent
	DataComponent storing calibration information for TrackingInstruments. More...
class	LiveStreamProcessingAlgorithm
	Abstract base class for algorithms performing live stream processing without necessarily recording the data. More...
class	OfflineStream
	Stream class which supports step-by-step playback and direct access of data samples. More...
class	OutputConnection
	Interface for connections to other devices for sending streams, volumes, and other information through network, USB port or other connection types. More...
class	OutStream
	Base class for streams which are sent by an OutputConnection through network or other ports. More...
class	PlaybackAlgorithm
	Creates PlaybackImageStream and/or PlaybackTrackingStream from one SharedImageSet, one TrackedSharedImageSet, or one or multiple TrackingSequences. More...
class	PlaybackController
	Controller for replaying (potentially tracked) shared image sets. More...
class	PlaybackImageStream
	Image-based stream created from the playback of an image set. More...
class	PlaybackStreamBase
	Base class for various playback streams. More...
class	PlaybackTrackingStream
	Creates simulated live tracking by playing back the data of a TrackingSequence class. More...
class	PolyDataOutStream
	Mesh or point cloud stream which is sent by an OutputConnection through network or other ports. More...
class	PolyDataStream
	Specialization of Stream for streams producing polygonal data, such as meshes or point clouds. More...
class	PolyDataStreamData
	Polygonal data (point clouds or meshes) streamed from a streaming device. More...
class	PolyDataStreamMeshDisplayOptions
	Display options for a PolyDataStream mesh. More...
class	PolyDataStreamPointCloudDisplayOptions
class	PolyDataStreamDisplayOptions
	Display options for a PolyDataStream. More...
class	PolyDataStreamDisplayOptionsWidget
class	PolyDataStreamVisualizationAlgorithm
	Algorithm for visualizing an incoming polydata stream. More...
class	Seekable
class	SharedImageRingBuffer
	Holds a vector of shared_ptr<SharedImage>, which can be used alternatively to avoid reallocation It provides methods to get the next buffer which is not held by some other listener as well, and can be hence written into. More...
class	Stream
	Base class representing a stream of changing data in the DataModel. More...
class	StreamAlgorithm
	Type-erased base of CreateStreamAlgorithm. More...
class	StreamAlgorithmBase
	Interface for algorithms that work on streams. More...
struct	StreamAlgorithmExecutorPayload
	Work item for the StreamAlgorithmExecutor. More...
class	StreamAlgorithmExecutor
	Generic algorithm that allows the execution of arbitrary algorithms on each image coming in through an image stream. More...
class	AlgorithmExecutorStream
	Image stream helper class used as output of the StreamAlgorithmExecutor class. More...
class	StreamAlgorithmExecutorController
class	StreamController
	Implementation of the DataController interface for manipulating streams. More...
class	StreamControllerBase
	Base AlgorithmController for creating controllers of streaming algorithms, but it can also be used directly to show a auto generated UI for a Stream. More...
class	StreamData
	Base class for all data streamed from a streaming device. More...
class	StreamForwarder
	Transfers stream data from an input stream to an output stream. More...
class	StreamFps
	Frames per second computation for a stream. More...
class	SubstreamBase
	Non-templated base class for substreams in a StreamGroup. More...
class	StreamGroupBase
	Non-templated base class for stream groups. More...
class	StreamGroup
	Templated stream group class for bundling multiple streams using the CRTP pattern. More...
class	Substream
	Template class for creating dummy substreams fully controlled by the proxy stream. More...
class	TrackingSubstream
	Dummy tracking substream for use in StreamGroups. More...
class	TrackingInstrumentComboBox
	QComboBox widget for selecting TrackingInstruments from a TrackingStream. More...
class	StreamIoAlgorithm
	Type-erased base of CreateStreamIoAlgorithm. More...
class	StreamAlgorithmFactory
	Factory for algorithms in the stream plugin. More...
class	StreamAlgorithmControllerFactory
	Factory for controllers for stream algorithms that are registered in the StreamAlgorithmFactory. More...
class	StreamDataAnnotationFactory
	Factory for data annotation in the stream plugin. More...
class	StreamPlugin
	Plugin for real-time streaming of image, tracking, or custom data and network communication. More...
class	StreamRecorder
	Abstract base class for stream recorders. More...
class	StreamRecorderAlgorithm
	Records multiple ImageStream and TrackingStream instances and optionally merges their results into one or more TrackedSharedImageSet objects. More...
class	StreamRecorderController
	Controller for recording and synchronizing any combination of ImageStreams and TrackingStreams. More...
class	StreamSettings
	Settings for the Stream plugin. More...
class	SubstreamWrapper
	Generic wrapper to integrate an existing Stream into a StreamGroup as a substream. More...
class	ThreadSafeInstrumentsBase
	Non-templated and fully abstract base class for ThreadSafeInstruments. More...
class	Clonable
	Interface for virtual copy construction. More...
struct	UnusedSpecial
	Placeholder struct for the extra container. More...
class	ThreadSafeInstruments
	Specialized class of ThreadSafeInstrumentsBase with the option to manage additional metadata, which is held in a struct/class Special next to the TrackingInstrument. More...
class	TrackingInstrumentTable
	Table widget for displaying and managing TrackingInstruments from a TrackingStream. More...
class	TrackingOutStream
	Stream of tracking data which is sent by an OutputConnection through network or other ports. More...
class	TrackingStream
	Specialization of Stream for streams producing tracking data for spatial localization. More...
class	TrackingStreamData
	Tracking data streamed from a streaming device for spatial localization of tools, images, etc. More...
class	TrackingStreamDisplayOptions
	Display options for a TrackingStream. More...
class	TrackingStreamProperties
	Properties dialog for configuring calibration and registration of a TrackingStream. More...
class	TrackingStreamPropertiesAlgorithm
	Utility algorithm to launch the TrackingStreamProperties dialog for a TrackingStream to allow interactive editing of calibration matrices, registration, and main instrument selection. More...
class	TrackingStreamRecorder
	Records data from a TrackingStream. More...
class	TrackingStreamVisualizationAlgorithm
	Algorithm for real-time visualization of tracking data from a TrackingStream (deprecated). More...
class	VideoCameraIoFactory
	Factory for VideoCameraStreams used by the framework, in particular the VideoStreamIoAlgorithm and associated controller. More...
class	VideoCameraStream
	Interface for video streams from cameras Derived classes must override setFormat and setDeviceByIndex (and call the base class versions from there), as well as enumerateDevices. More...
class	VideoCameraStreamPropertiesInspector
	Specialization of PropertiesInspector for use with live camera streams. More...
class	VideoCameraStreamPropertiesInspectorController
	Controller of the VideoCameraStreamPropertiesInspector algorithm. More...
class	VideoStreamIoAlgorithm
	IO Algorithm for streaming videos. More...
class	VideoStreamIoAlgorithmHelper
class	SeekableStream
class	StreamVitalsDataController
	Aggregates stream data-wise VitalsDataComponent signals and adds a vitals overlay to the 2D and 3D views. More...
class	VideoFileStream
	Stream images from a video file. More...
class	VideoStreamBackendOpenCV
	Backend for OpenCV based video streams Virtual base class that handles most of the functionality of an OpenCV based stream. More...
class	VideoStreamExtractionAlgorithm
	Extracts part of a video stream. More...
class	VideoCameraStreamOpenPnp
	Stream for videos This is supposed to be created by the corresponding IO algorithm. More...
class	LiveStreamingAlgorithm
	Takes images from ImageStream (8bit images) encodes them and sends them via a web socket. More...
class	RemoteVideoStream
	Creates image stream which receives the Image data via network connection. More...
class	StreamToVideoRecorder
class	VideoDecoder
	VideoDecoder is responsible of processing the received ByteBuffer which contains the image data. More...
class	VideoEncoder
class	BullseyeVisualizationAlgorithm
	Algorithm for the visualization of a bull's eye and simplified target distance sketch in the 3D view. More...
class	BullseyeVisualizationController
	Controller for the visualization of tools such as needles in MPRs and 3D view and a bull's eye overlay in 3D view. More...
class	CombinedTrackingStream
	A TrackingStream that combines the poses of two TrackingInstruments into a single relative tracking or a composition of the two. More...
class	CombinedTrackingStreamController
	Controller to add combination instructions to the CombinedTrackingStream. More...
class	GlToolTargetOverlay
	Overlay for displaying the distance and orientation of a tool with respect to a target position. More...
class	LiveTrackingPointRegistrationAlgorithm
	Performs point-based registration between a volume and a tracked tool. More...
class	NavigationAlgorithmFactory
	Factory for algorithms in the navigation plugin. More...
class	NavigationAlgorithmControllerFactory
	Factory for controllers for navigation algorithms that are registered in the NavigationAlgorithmFactory. More...
class	NavigationPlugin
	Plugin for real-time navigation and visualization of tracking tools. More...
class	PointsOnTrackingStream
	Manages a collection of points associated with a TrackingStream. More...
class	PointsOnTrackingStreamManipulator
	Handles creation and manipulation of points from a TrackingStream. More...
class	SmoothedTrackingStream
	Stream to smooth any TrackingStream. More...
class	ToolCalibrationAlgorithm
	Algorithm for pointer tool calibrations. More...
class	ToolCalibrationController
	Controller for ToolCalibrationAlgorithm. More...
class	ToolVisualizationAlgorithm
	Algorithm for the visualization of tools such as needles in MPRs and 3D view. More...
class	ToolVisualizationController
	Controller for the visualization of tools such as needles in MPRs and 3D view. More...
class	TrackingToolCalibrationWizard
	Workflow controller to perform a pointer calibration of a TrackingInstrument. More...
class	TrackingToolCalibrationWizardAlgorithm
	Algorithm for stepwise pointer calibration of a TrackingInstrument. More...
class	DISAFeaturesAlgorithm
	Algorithm for extracting DISA features from a 3D volume By default the algorithm uses the same model used for the MICCAI 2023 publication, which can be executed by Torch and Onnx engines. More...
class	MLPlugin
	Plugin for algorithms from ML module. More...
class	CreatePixelwiseLearningStreamAlgorithm
	Create a pixelwise learning stream from an existing stream. More...
class	AbstractImageRegistration
	The AbstractImageRegistration class is an interface for all image-based registrations. More...
class	AnalyzeMotion
	Analyzes successive 2D images for various motion parameters. More...
class	ClDeformation
class	DemonsImageRegistration
	Registers two images with the Demons algorithm The algorithm modifies the GlDenseDeformation object attached to the moving image A number of variants of the standard demons algorithm (diffeomorphic vs additive, various gradient modes) are supported (cf. More...
class	DisplacementVisualizer
	Algorithm/GlObject hybrid to display an image's displacement as a vector field in an ImageView2D. More...
class	PoseHistory
	Class for keeping track of the poses of an image and provide undo/redo functionality. More...
class	DescriptorsRegistrationAlgorithm
	Class for performing image registration using local feature descriptors. More...
class	DescriptorsRegistrationController
class	FFDImageRegistration
	Registers two images with a non-linear deformation based on FFDs. More...
class	FeatureMapsRegistrationAlgorithm
	Algorithm for registering feature maps volumes. More...
class	FitBoundingBoxAlgorithm
	Algorithm to fit an oriented bounding box. More...
class	GatedLinear4DImageRegistration
	Registers two volume clips using a rigid/affine transformation, including a gating phase offset between the two. More...
class	GlDeformationGrid
	The GlDeformationGrid visualizes the deformation of an image through the deformation of a grid rendered on top of the image. More...
class	GlPolyRigidDeformation
	Poly-rigid deformation class. More...
class	ImageBasedGatingAlgorithm
	Compute cardiac or respiratory gating parameters by detecting periodic structural change in the images. More...
class	LiveImageBasedGating
	Compute cardiac or respiratory gating parameters by detecting periodic structural change in the images To use, feed a consecutive block of frames into initialize and get their phase values. More...
class	LiveImageBasedGatingTestAlgorithm
class	ImageRegistration
	High-level interface for image registration. More...
class	ImageRegistrationController
class	ImageSetAutoCorrelation
	Compute an auto-correlation (band) matrix of an image set. More...
class	ImageSequenceRegistration
	Registers a SharedImageSet of multiple images. More...
class	ImageTransformer
	The ImageTransformer class provides a generic way of transforming from the pixel coordinates of one image to the pixel coordinates of another image including any world transformations. More...
class	LabelOverlapAlgorithm
class	LC2Preprocessing
class	LinearGridRegistration
	Registers a set of images arranged in a 2D grid. More...
class	LinearImageRegistration
	Registers two images using a rigid/affine transformation. More...
class	MirrorRegistrationAlgorithm
	Locally Estimate Mirror symmetry of a volume, and use it to estimate the mirror plane. More...
class	ParametricDeformableRegistration
	Registers two images with a non-linear deformation based on TPSs. More...
class	ParametricImageRegistration
	Base class for parametric image registration algorithms. More...
class	ParametricImageRegistrationController
class	PolyRigidDeformationAlgorithm
	Set up a poly-rigid deformation on a volume and multiple labels. More...
class	PolyRigidImageRegistration
	Registers two images with a non-linear poly-rigid deformation. More...
class	RegistrationFromPredictionMapAlgorithm
	Algorithm to register two images based on prediction maps. More...
class	RegistrationInitAlgorithm
	Initialize the registration of two volumes by moving the second one. More...
class	RegistrationResults
	Class responsible for managing and storing the results of data registration. More...
class	RegistrationResultsBrowser
	Shows a dialog allowing to browse RegistrationResults stored in a folder. More...
class	RegistrationResultsAlgorithm
	Store registration results for data combinations. More...
class	ApplyRegistration
	Class that allows to apply registration results on algorithm input data. More...
class	RegistrationResultsIoAlgorithm
	Algorithm for loading ImFusion Registration Results (irr) files. More...
class	RegistrationResultsController
	GUI controller managing registration results. More...
class	RegPlugin
	Plugin for algorithms from Registration plugin. More...
class	SimilarityMeasureImpl
	Base class of a similarity measure between two images. More...
class	SimilarityMeasureDotProduct
class	SimilarityMeasureFactory
	The SimilarityMeasureFactory class provides a generic interface to any kind of SimilarityMeasure. More...
class	SimilarityMeasureImplHistBased
class	SimilarityMeasureLC2
class	SimilarityMeasureLC2_CPU
class	SimilarityMeasureLC2_GPU
class	SimilarityMeasureLNCC
class	SimilarityMeasureLNCC_CPU
class	SimilarityMeasureLNCC_GL
class	SimilarityMeasureSSIM
class	SimilarityMeasureSSIM_CPU
class	SimilarityMeasureSSIM_GL
class	SimilarityMeasureMI
	Computes the Mutual Information of two images. More...
class	SimilarityMeasureMI_CPU
	CPU implementation of Mutual Information. More...
class	SimilarityMeasureMI_GL
	GPU implementation of Mutual Information using modern OpenGL. More...
class	SimilarityMeasureML
	Machine Learning based similarity measure. More...
class	SimilarityMeasurePatchBased_GL
	Helper class for patch based similarity measures. More...
class	SimilarityMeasureImplPixelWise
class	SimilarityMeasurePixelWise_CPU
class	SimilarityMeasurePixelWise_GL
class	SimilarityMeasureSAD_CPU
class	SimilarityMeasureSAD_GL
class	SimilarityMeasureSSD_CPU
class	SimilarityMeasureSSD_GL
class	SimilarityMeasureNCC_CPU
class	SimilarityMeasureNCC_GL
class	SimilarityMeasureNGF_GL
class	SimilarityMeasureTester
class	SimilarityMeasureWrapper
	Wrapper for safe and configurable use of various similarity measures. More...
class	TPSImageRegistration
	Registers two images with a non-linear deformation based on TPSs. More...
class	VolumeBasedMeshRegistrationAlgorithm
	Calculates a deformable registration between two meshes by calculating a deformable registration between distance volumes. More...
class	VolumeBasedMeshRegistrationController
class	DeformableIcp
	Implements a regularized-least-squares-based iterative closest point (ICP) procedure for deformable registration of two sets of points. More...
class	DeformableIcpAlgorithm
	Regularized-least-squares-based iterative closest point (ICP) algorithm for deformable registration of two meshes, a mesh to a point cloud, or two point clouds representing a curve. More...
class	GraphPlugin
	Plugin for algorithms from Graph module. More...
class	GraphPluginFactory
	Factory for algorithms of the Graph plugin. More...
class	GraphPluginControllerFactory
	Factory for controllers of the Graph plugin. More...
class	GraphDataAnnotationFactory
class	Graph
	Class for representing a (potentially directed) graph. More...
class	GlGraph
	Annotation for visualizing a graph consisting of nodes and edges. More...
class	GraphDataController
	Controller for managing interactive feature-based color mapping for graphs. More...
class	GraphToPointCloudAlgorithm
	Algorithm to convert graphs into point clouds by treating vertices as point cloud points. More...
class	GraphSmoothingAlgorithm
class	GraphReindexingAlgorithm
	Algorithm to renumber nodes in a connected graph starting from a specified root using DFS traversal. More...
class	CombineGraphsAlgorithm
	Algorithm to combine multiple graphs into a new graph. More...
class	ComputeCommonGraphFeaturesAlgorithm
	Algorithm for computing different edge features such as length, diameter, cross-section, and node degree in a graph. More...
class	CenterlineGraphExtractionAlgorithm
class	MinimumSpanningTreeAlgorithm
	Algorithm to compute the Minimum Spanning Tree (MST) of an undirected cyclic graph, i.e. More...
class	NodeToEdgeFeatureAlgorithm
	Applies a specified binary operation (e.g., difference, sum, average) to features of connected nodes and stores the computed values as edge features. More...
class	PartitionGraphsAlgorithm
	Algorithm to partition a graph into its connected components. More...
class	PruneTerminalPathsAlgorithm
	Algorithm to prune a graph, i.e. remove terminal paths or edged with lengths below a given threshold. More...
class	DrawGraphAlgorithm
	Algorithm to create or edit a graph. More...
class	DrawGraphController
class	GraphManipulator
	A manipulator for graphs. It expects Graph::Interaction(s) to be added. More...
class	EvaluateGraphAtImageAlgorithm
class	GraphMLIoAlgorithm
	Algorithm for loading/saving a graph to a .graphml file. More...
class	TransferGraphFeatureToMeshAlgorithm
	Class to compute a vertex-wise color given a feature in the closest edge/node from the input centerline graph. More...
class	TransferGraphFeatureToMeshController
class	GraphToLabelMapAlgorithm
class	BrainVesselSegmentationAlgorithm
class	DoseComputationAlgorithm
	Computes the dose distribution from PET/SPECT images. More...
class	FiducialExtractionAlgorithm
	Extract spherical fiducials from data set in 2D and 3D. More...
class	GlIsolineRenderer
	GlObject to render a label map into a GlSliceView using isolines. More...
class	GlLabelRenderer
	GlObject to render a label map into a GlSliceView. More...
class	GraphBasedSegmentation
	Image segmentation in 2D or 3D using graph-based segmentation. More...
class	GraphLaplacianAlgorithm
	Image segmentation in 2D or 3D using graph-based segmentation to solve a Laplacian problem. More...
class	HistogramIntensityClusteringAlgorithm
	HistogramIntensityClusteringAlgorithm. More...
class	IntensityClusteringAlgorithm
	Algorithm for intensity-based clustering using k-means. More...
class	InteractiveSegmentationAlgorithm
	Interactive segmentation algorithm. More...
class	InteractiveSegmentationController
	Controller for interactive segmentation. More...
class	InteractiveSegmentationWatershedAlgorithm
class	MorphologicalInterpolationAlgorithm
	Algorithm to interpolate between two label maps. More...
class	LabelMapInterpolationAlgorithm
	Algorithm to run a 3D interpolatation of a label map with sparsely labelled slices EITHER Input is a 3D label map with a couple of non-zero z-slices, output is the interpolated volume OR Input is a set of 2D label maps some of them being not empty, output is the interpolated 2D sequence. More...
class	LabelMapToContoursAlgorithm
	Algorithm to generate a closed contour encompassing a label map. More...
class	LabelMapPropagationAlgorithm
	Algorithm to propagate a label map along a sequence of images. More...
class	LabelStatisticsAlgorithm
	The LabelStatisticsAlgorithm computes image statistics depending on several label maps. More...
class	LabelToFrameBasedPointCloudAlgorithm
	Given a label map and a tracked shared image set, create a frame based point cloud. More...
class	LabelToMeshAlgorithm
	Algorithm to convert label maps to meshes. More...
class	LabelingAlgorithm
	Labeling algorithm. More...
class	LabelingController
	Controller for labeling algorithm. More...
class	LabelingManipulator
	Manipulator for circle-based annotations. More...
class	LabelsToNarrowBandAlgorithm
	Algorithm that creates a narrow band around an object represented by a label map. More...
class	LineToIsosurfaceIntersectionAlgorithm
	Finds the intersection between a ray and the first isosurface. More...
class	LineToIsosurfaceIntersectionController
	Controller for the LineToIsosurfaceIntersectionAlgorithm. More...
class	LiverDetectionAlgorithm
	Automatically segments the liver with a neural network on MR and CT datasets. More...
class	MakeCompatibleLabelMapAlgorithm
	Algorithm to create a label map compatible with an image. More...
class	MarkAsLabelMapAlgorithm
	Algorithm to mark any image as a Label Map. More...
class	MaskFluoroImageAlgorithm
	Detect circle in fluoro shots. More...
class	SegPlugin
	Plugin for algorithms from Seg module. More...
class	FitShapeAlgorithm
class	SegmentationReductionsAlgorithm
	Computes basic image reductions of segmentation images, for instance vessel segmentations, including center of gravity and area. More...
class	SkinSegmentationAlgorithm
	Segment the skin surface from a CT or MRI volume. More...
class	SplineLabelPainterAlgorithm
	Algorithm for executing the label painter on an image guided by a spline. More...
class	SplineLabelPainterAlgorithmController
	Controller for SplineLabelPainterAlgorithm. More...
class	WatershedComputer
class	WatershedSegmentationAlgorithm
	Watershed segmentation algorithm. More...
class	ImageMathPlugin
class	SharedImageArithmeticAlgorithm
	ImageMath algorithm class. More...
class	Vision
	Legacy computer vision algorithms for CT. More...
class	AbstractFactory
class	CameraCalibrationDataComponent
	A data component storing mainly the intrinsic calibration of a pinhole camera Information such as image size, extrinsic poses and distortions are also stored Debug values like MRE and standard deviations estimated for intrinsic parameters, which are used for evaluating the calibration results during the calibration process are also saved here. More...
class	CreateStereoSharedImageSetAlgorithm
	The algorithm creates a stereo shared image set from two shared image sets The algorithm take over the ownership of the input two image sets It is recommended to first run this algorithm to convert the two image sets into a stereo image set before using any stereo-related algorithm. More...
class	CalibrationOptimizer
	Interface for calibration optimizers. More...
class	HandEyeCalibrationAlgorithm
	Performs hand-eye calibration between two tracking sequences. More...
class	ImageSharpnessEstimationAlgorithm
	Algorithm for esimating sharpness of the image (based on paper "The Blur Effect: Perception and Estimation with a New No-Reference Perceptual Blur Metric"). More...
class	InterlacedToStereoAlgorithm
	This algorithm converts a interlaced image into two shared image sets or a stereo image set Input image should have even number of lines. More...
class	LeastSquaresPoseGraphSolution
	Pose graph optimization with Least Squares solution based on g2o's implementation The first pose is the reference pose and will stay fixed, all other poses are free to change. More...
class	MotionAveragingPoseGraphSolution
	Pose graph optimization with motion averaging, this is to be utilized in MAICP The first pose is the reference pose and will stay fixed, all other poses are free to change. More...
class	PoseGraphOptimization
	Pose graph optimization The first pose is the reference pose and will stay fixed, all other poses are free to change. More...
class	SideBySideToStereoAlgorithm
	This Algorithm converts a side-by-side images set to a Stereo Image Set. More...
class	StereoCalibrationDataComponent
	A data component storing the registration matrix between the left and right camera of a stereo camera pair. More...
class	StereoImage
	This class stores a pair of images, taken by a stereo camera at the same time point. More...
class	StereoImageExtractSelection
	Algorithm to extract the current StereoSharedImageSet selection into a new object instance. More...
class	StereoImageImFusionFilePlugin
	Loading and saving of the ImFusion stereo image format. More...
class	StereoImageReduceToSelection
	Algorithm for reducing a StereoSharedImageSet to its selected samples. More...
class	StereoSharedImageSet
	This class is the main high-level container for stereo image data set. More...
class	StereoSharedImageSetController
	Shows regular StereoSharedImageSet instances (no derivatives) in ImageView2D. More...
class	ThresholdingFiducialExtractionController
	Controller to extract fiducials from 2D IR images by thresholding and weighted average. More...
class	VisionDataAnnotationFactory
class	VisionPlugin
	Plugin for Vision algorithms. More...
class	BlobDetector
class	CameraCalibrationAlgorithm
	Camera calibration algorithm Description: More...
class	CameraCalibrationSettings
	The class stores all parameters/settings for camera calibration. More...
class	CameraCalibrationSettingsWidget
	This widget allows specifying parameters for camera calibration. More...
class	CameraRegistrationAlgorithm
	Camera registration algorithm Description: This algorithm performs camera registration for a stereo camera system using known fiducial markers (e.g., chessboard or a ChArUco board) to estimate the relative pose between the left and right cameras. More...
struct	Keypoint
	Structure representing a detected keypoint and its descriptor. More...
class	FeatureDetector
	Base class for feature detection on 2D images. More...
struct	FeatureMatch
	Structure representing a match between two keypoints. More...
class	FeatureDetectorWithAdaptiveThreshold
	Feature detection with adaptive thresholding to fill image grid with features. More...
class	FeatureSampler
	Base class for feature sampling. More...
class	FeatureMatcher
	Base class for feature matching on 2D images. More...
class	ORBFeatureDetector
	Implementation of the ORB feature detection and description algorithm. More...
class	SIFTFeatureDetector
	Implementation of the SIFT feature detection and description algorithm. More...
class	ShiTomasiFeatureDetector
	Implementation of the Shi-Tomasi corner detection algorithm. More...
class	IdentitySampler
	Identity sampler, returns input keypoints unchanged. More...
class	NMSSampler
	Non-Maximum Suppression sampler. More...
class	BruteForceMatcher
	Brute-force matcher for feature descriptors. More...
class	GridBasedMatcher
	Grid-based matcher for feature descriptors. More...
class	FeatureMatchPruner
	Base class for pruning feature matches. More...
class	IdentityMatchPruner
	Identity match pruner, returns input matches unchanged. More...
class	HomographyMatchPruner
	Pruner using homography inlier threshold. More...
class	FundamentalMatrixMatchPruner
	Pruner using fundamental matrix inlier threshold. More...
class	AutomaticMatchPruner
	Automatic pruner selecting between homography and fundamental matrix based on decomposition score. More...
class	MatchScorePruner
	Pruner based on match score and/or maximum number of matches. More...
class	GMSPruner
	Pruner applying motion smoothness as a criterion (GMS). More...
class	FeatureDetectionAlgorithm
	Feature detection algorithm. More...
class	FeatureDetectorFactory
class	FeatureSamplerFactory
class	FeatureMatcherFactory
class	FeatureMatchPrunerFactory
class	HomographyAndFundamentalMatrixDecomposition
	This class, given point correspondences from two images, estimates the homography and the fundamental matrix, then, depending on the score, decomposes one of them into rotation and translation. More...
class	ImageUndistortion
	This class enables the undistortion of images, i.e. More...
class	ImageUndistortionAlgorithm
	Algorithm for undistoring images, intrinsics and distortion parameters are retrieved from CameraCalibrationDataComponent, if not then user defined ones are used. More...
class	MarkerConfiguration
	Describes the configuration of a marker calibration target. More...
class	MarkerConfigurationWidget
class	MarkerDetection
	Generic marker detection class for a wide range of marker types, such as Aruco, Charuco, Chessboard, Circle Board, AprilTag and STag. More...
class	MarkerDetectionAlgorithm
	Marker detection algorithm. More...
class	MarkerGenerationAlgorithm
	Algorithm for creating calibration markers. More...
class	MarkerHandEyeCalibrationAlgorithm
	Performs hand eye calibration of a sensor that provides tracking information (called "tracker") to a camera that captured images of a marker board (called "camera"). More...
class	OpticalFlow
	Base class for optical flow algorithms producing flow maps (2-channel floating point images). More...
class	OpticalFlowFactory
class	StereoReconstruction
	Base class for stereo reconstruction algorithms producing disparity maps. More...
class	StereoReconstructionFactory
class	StereoBlockMatchingReconstruction
	Implementation of block matching stereo reconstruction It depends on block matching from OpenCV. More...
class	StereoSemiGlobalBlockMatchingReconstruction
	Implementation of Semi Global block matching stereo reconstruction It depends on Semi Global block matching from OpenCV. More...
class	StereoReconstructionAlgorithm
	This algorithm performs 3D reconstruction from a pair of stereo images. More...
class	StereoRectification
	Performs stereo rectification und unrectification on images. More...
class	StereoRectificationAlgorithm
	Stereo Rectification Algorithm. More...
class	GlobalICP
	Global ICP point cloud alignment. More...
class	ICP
	ICP-based point cloud alignment. More...
class	PointCloudFilteringAlgorithm
	Implements a flexible and extensible algorithm for filtering and processing point clouds. More...
class	PointCloudOverlapAlgorithm
	Computes the geometric overlap between multiple dense, calibrated point clouds. More...
class	PoseGraphOptimizationAlgorithm
	Pose graph optimization using motion-averaging or graph-based least squares solver. More...
class	MeshAlignmentAlgorithm
	Algorithm for aligning meshes and point clouds. More...
class	MonocularDepthEstimation
	Base class for monocular depth estimation algorithms producing depth maps and (optionally) also point clouds. More...
class	MonocularDepthEstimationFactory
class	MonocularDepthEstimationAlgorithm
	Algorithm for estimating relative depth from a single RGB image. More...
class	MonocularDepthEstimationDepthAnything
class	MonocularDepthEstimationCustomModel
	Performs depth estimation on a monocular image using a traced machine learning model provided by the user. More...
class	OpticalFlowRAFT
class	OpticalFlowSEARAFT
class	OpticalFlowCustomModel
	Performs optical flow estimation using a traced machine learning model provided by the user. More...
class	RIDEFeatureDetector
	Implementation of "RIDE: Self-Supervised Learning of Rotation-Equivariant Keypoint Detection and Invariant Description for Endoscopy" published at ICRA 2024: https://ieeexplore.ieee.org/abstract/document/10611381. More...
class	StereoCGIReconstruction
class	StereoReconstructionRAFT
class	StereoReconstructionCustomModel
	Performs stereo reconstruction using a traced machine learning model provided by the user. More...
class	LiveHandEyeCalibrationAlgorithm
	Takes two tracking streams, and allows to sample frames and to compute the calibration from them The expected input is a stream containing the transforms from base to hand (i.e. More...
class	LiveHandEyeCalibrationController
	Controller for sampling and computation of the calibration. More...
class	LiveHandEyeEvaluationAlgorithm
	Takes two tracking streams and the respective calibration, and computes the chain error. More...
class	LiveHandEyeEvaluationController
	Controller for determining the type of calibration to be checked, and inspect the result. More...
class	CameraCalibrationSetterAlgorithm
	The algorithm loads an existing calibration onto a given image set or image stream. More...
class	CreateGroupedStereoImageStreamAlgorithm
	The algorithm creates a GroupedStereoImageStream from two image streams and takes over their control Before using any stereo-related algorithms (e.g., depth estimation, disparity calculation, or 3D reconstruction), it is recommended to first run this algorithm to convert the two image streams into a stereo image stream. More...
class	GroupedStereoImageStream
	GroupedStereoImageStream simultaneously owns and controls its stereo sub-streams. More...
class	PlaybackStereoImageStream
	StereoImage-based stream created from the playback of a stereo image set. More...
class	PlaybackStereoImageStreamAlgorithm
	Creates PlaybackStereoImageStream from one StereoSharedImageSet For more details please refer to PlaybackStereoImageStream. More...
class	PlaybackStereoImageStreamController
	Controller for replaying stereo shared image sets. More...
class	SideBySideToStereoStreamAlgorithm
	This class convert a stream with side-by-side image into a stereo image stream. More...
class	StereoCalibrationSetterAlgorithm
	The algorithm loads an existing calibration onto a given stereo image set or stereo image stream. More...
class	StereoImageStream
	Base class for streams based on stereo images. More...
class	StereoImageStreamDataController
	Data Controller for StereoImageStream. More...
class	StereoImageStreamData
	Stereo Image data streamed from a stereo camera. More...
class	InterlacedToStereoStreamAlgorithm
	This class convert a stream with interlaced image into a stereo image stream Input image should have even number of lines. More...
class	LiveStereoCalibrationAlgorithm
	Takes two image streams, and allows to sample frames and to compute the calibration from them Both streams have to see the same calibration board The output is the intrinsic calibration for each camera, transformation between the cameras and the deformation fields for stereo rectification Another variant of the algorithm takes image samples as an input. More...
class	LiveStereoCalibrationController
	Controller for sampling and computation of the calibration. More...
class	LiveTrackingAlgorithm
	Live tracking algorithm for image based pose detectors Use the Configurable interface for setting up the detector. More...
class	StereoStreamReconstructionAlgorithm
	Performs real-time 3D scene reconstruction from stereo camera input. More...
class	StereoStreamToVideoRecorder
	Records stereo image streams to two video files The algorithm internally uses VideoFileRecorder to save videos. More...
class	StereoStreamToVideoAlgorithm
	Algorithm to record stereo image streams to video files The algorithm internally uses VideoFileRecorder to save videos. More...
class	MeshGroupCollisionDetection
	Test for collision between two groups of meshes. More...
class	MeshCollisionDetectionAlgorithm
	Algorithm that checks for collision between groups of meshes. More...
class	MeshCollisionDetectionController
struct	ImageMetadata
struct	ViewerMetadata
struct	RegionOfInterest
class	DataDescriptor
class	DataSet
class	DatasetLicenseSystem
class	Experiments
class	ImFusionLabels
class	UpdateChecker
class	ImFusionLabelsPlugin
	Base class for ImFusion SDK plugins that also provide functionality to ImFusion Labels. More...
class	LabelBgDataComponent
class	LabelsSettings
class	LabelsAuthorizationProvider
	Provides authorization for the remote project as well as DICOMweb and other web resources. More...
struct	GeometricAnnotation
class	Project
class	ProjectHelpers
class	ProjectSortFilter
union	TagValue
struct	TagType
class	TagSystem
class	TagValues
class	ThumbnailLoader
class	Singleton
struct	NiftiIODataComponent
class	GeometricAnnotationsAction
class	BrushAction
class	ThresholdingAction
class	DrawContourAction
	An action that allow to draw contours. More...
class	DefaultAction
class	DefineROIAction
class	FrameInfoDataComponent
class	ImportAction
	Action for importing labelmaps or annotations from a file. More...
class	InteractiveSegAction
class	InteractiveDeformationAction
class	LabelMapPropagationAction
class	RelatedDataAction
class	DataSetPropagationAlgorithm
class	ConnectedComponentsAction
class	EmptyAction
class	RefineAction
class	RunAlgorithmAction
class	ReplaceValuesAction
class	SliceInterpolationAction
class	TemplateDeformationAction
class	UndoAction
class	EraseAction
class	MeasurementAction
class	AnnotationPanel
struct	AnnotationActionSharedState
class	AnnotationAction
class	GalleryWidget
class	AnnotationView
class	GroupingGalleryWidget
class	DatabaseView
class	DataControllerHandler
class	ExperimentsView
class	ExportView
class	MainView
class	AnnotationOnlyView
struct	SettingsDialogResult
class	Interaction2D
class	FloatingActionButton
	A button floating in the left button of its parent widget. More...
class	CheckableImage
class	FlowLayout
struct	IconInfo
struct	PaintResultRects
	Contains information about where the painter drew different elements. More...
class	ImportGalleryPainter
class	DefaultGalleryPainter
class	LabelOverlay
class	ImageRegistrationWidget
class	LabelSelector
class	TagsEditor
class	FrameSelector
class	BrushSettingsWidget
class	NotchedScrollBar
class	TagSelector
class	AutoStretchImage
class	TagFilterState
class	TagFilterDropDown
struct	DatasetLicenseFilterState
class	DatasetLicenseFilter
class	DatasetLicenseEditor
class	ListManipulator
class	FramedWidgetWithButtons
class	TotalSegmentatorAction
	Provides an action that can run TotalSegmentator and map the resulting labels to the project. More...
class	AnatomicalStructure
	Interface for storing information (points, meshes, images, ...) about anatomical structures. More...
class	AnatomicalStructureCollection
	Interface for managing collections of anatomical structures For a concrete implementation of this class, see GenericASC. More...
class	ASCDataDisplayHandlerBase
	Display handler that configures the visual representation of an AnatomicalStructureCollection element. More...
class	ASCDataDisplayHandler
	Template class that creates an ASCDataDisplayHandlerBase for a specific ASCVisualiser/AnatomicalStructureCollection pair. More...
class	ASCDeformation
	Class for representing "deformations" over an AnatomicalStructureCollection. More...
class	ASCDisplayOptions
	DataComponent to store AnatomicalStructureCollection-specific rendering options for 3D views. More...
class	ASCVisualiser
class	AnatomicalStructureDeformation
	Deformation of a single AnatomicalStructure object. More...
struct	AnatomicalStructurePointwiseDeformation
	Class for representing nonlinear transformations on a set of points e.g. More...
class	AnatomicalStructureFactory
class	AnatomicalStructureRegistration
	Interface for registering AnatomicalStructure objects to each other. More...
class	GlMeshOutline
class	AnatomicalStructureVisualiserBase
class	AnatomicalStructureVisualiser
	Helper class for visualizing data contained in the AnatomicalStructure class. More...
class	AnatomiesInfo
	Singleton class that holds a map of anatomies together with information related to that anatomy (such as display color, etc). More...
class	ApplyASCDeformation
	Algorithm for converting an ASCDeformation into a (dense) deformation field. More...
class	ASCAlgorithm
class	KeyValueStore
	Template class for storing key/value pairs. More...
class	ASCAlgorithmController
class	ASCProjectionAlgorithm
class	ASCProjectionController
class	ProjectedAnatomicalStructure
class	ASCRegistrationInterface
	Abstract base class interface for algorithms that register two AnatomicalStructureCollection objects. More...
class	ASCRegistration
	Registration between two AnatomicalStructureCollections. More...
class	ASCRegistrationMethod
	Abstract base class for registration of AnatomicalStructureCollection objects to each other. More...
class	ASCSet
	Class storing a vector of AnatomicalStructureCollection objects. More...
class	ASCSetDisplayOptions
class	ASCIoAlgorithm
	Algorithm to import/export AnatomicalStructureCollections to .imf or .zip files. More...
class	ASImageBasedRefine
class	CombineASCSetAlgorithm
	Algorithm to combine AnatomicalStructureCollections into an ASCSet. More...
class	MergeASCAlgorithm
	This algorithm combines the AnatomicalStructures within multiple AnatomicalStructureCollection objects into one AnatomicalStructureCollection. More...
class	DefaultASCSegmentationController
	Helper template for creating controllers for segmentation algorithms using AnatomicalStructureCollection. More...
class	DefaultASCRegistrationController
	Controller for AnatomicalStructureCollection (ASC) registration algorithms that handles basic UI elements such as adding the ASCs to the DataModel, unlinking their pose with the moving Data if they were linked and re-linking on closure. More...
class	DependentKeypoint
	Represents a keypoint as linear combination of points in meshes or point clouds or other keypoints. More...
class	GenericAnatomicalStructure
	Generic bare-bones implementation of the AnatomicalStructure interface. More...
class	GenericASC
	Generic implementation of the AnatomicalStructureCollection interface. More...
class	GenericASCImFusionFilePlugin
class	ImpliedLocalCoordinates
	Helper class for storing an "image" representation of an object, and converting to/from image and world representations. More...
class	KeyNode
	Node element used in KeyTree below. More...
class	KeyTree
	Data structure that hierarchically organizes anatomy keys (strings). More...
class	KeyValueStoreVisualizerBase
class	KeyValueStoreVisualiserParent
class	KeyValueStoreVisualiser
	Helper class for managing GlObjects for every item in a KeyValueStore across a set of views. More...
class	SplitASCSetAlgorithm
	Algorithm to split an ASCSet into AnatomicalStructureCollections. More...
struct	ScaledIso3
	Class for representing uniformly scaled elements of E(3), where E(3) is the Euclidean group, i.e linear transformations that are isometries on R^3 Strictly speaking, such transformations are defined by a scaling (around the origin), translation, and a rotation around the origin. More...
struct	like_pointer
struct	like_pointer< std::unique_ptr< T > >
struct	like_pointer< std::shared_ptr< T > >
struct	like_pointer< T * >
struct	map_arrow_proxy
class	BinaryOpExpr
class	ScalingExpr
class	VertexExpr
class	MatMulExpr
class	MeshExpr
class	PointCloudExpr
class	EigenExpr
class	VectorExpr
class	AnatomicalStructureInvalidException
	Exception thrown when an anatomical structure is invalid Thrown by python bindings. More...
class	AnatomicalStructureWrapper
	Wrapper for anatomical structures that becomes invalid when the wrapped structure is deleted. More...
class	GenerateLinearShapeModel
	Mean shape and linear shape model generation algorithm for anatomical structures using closed mesh representations. More...
class	EvaluateLinearShapeModel
class	EvaluateLinearShapeModelController
class	CranialPluginFactory
	Factory for algorithms of the Abdomen plugin. More...
class	CranialPluginControllerFactory
	Factory for controllers of the Abdomen plugin. More...
class	SpinePlugin
	Plugin class responsible for initializing all spine related components. More...
struct	SpineCache
class	SpineBaseAlgorithm
	Spine localisation / classification and segmentation algorithm. More...
class	SpineBaseAlgorithmImpl
class	SpineBaseController
	Controller for Spine Algorithms. More...
class	SpinePluginFactory
	Factory for the spine workflow algorithms. More...
class	SpineControllerFactory
	Factory for the spine workflow controllers. More...
class	SpineDataAnnotationFactory
	Factory for the spine workflow controllers. More...
class	OrientedVertebra
	A representation of a vertebra, containing orientation, classification keypoints, segmentations, meshes and all other related information. More...
class	Sacrum
class	Ilium
class	IntervertebralDisc
struct	ModelEvalLog
class	CropAroundVertebraeOperation
class	SpinePolyRigidRegistration
class	VertebraDissectionLegacyAlgorithm
	Algorithm to dissect a vertebra segmentation into individual parts. More...
class	VertebraDissectionLegacyController
	Controller for the VertebraDissectionLegacyAlgorithm. More...
class	VectorDataComponent
class	SpineFromMultiLabelAlgorithm
class	SpineData
	Container for set of vertebrae and other spine-related metadata The SpineData class is the main Data type of the ImFusion SpinePlugin. More...
class	SpineDataImFusionFilePlugin
class	SpineDataVisualiser
	Specialization of the AnatomicalStructureCollection class for SpineData. More...
class	VertebraDissectionAlgorithm
	Algorithm for extracting structures of interest from an instance of SpineData The structures are extracted by performing a deformable mesh registration of a template structure onto the given input SpineData. More...
struct	EvaluationResult
	return type of metric computation More...
struct	VertebraEvaluationInstance
	instance of vertebra for segmentation evaluation More...
class	SpineSegmentationMetricInterface
	Segmentation metrics {. More...
class	SpineDiceMetric
class	SpineSurfaceDistanceMetric
class	SpineBinaryMetricInterface
	} More...
class	SpinePrecisionMetric
class	SpineRecallMetric
class	SpineF1Metric
struct	SegmentationInputData
	} More...
struct	LocalizationInputData
	Data for one localization evaluation instance -> one input scan + groundtruth keypoints. More...
struct	ClassificationInputData
class	SpineEvaluationIterator
	Base class iterator for individual scans and their label/meta data Lets its subclasses handle the loading. More...
class	SpineAlgorithmAdapterInterface
class	CTSpineAlgorithmAdapter
class	SpineEvaluation
class	SpineLocalizationEvaluation
class	SpineSegmentationEvaluation
class	SpineClassificationEvaluation
class	LoadSpineTemplateAlgorithm
class	SpinePolyRigidDeformation
	Set up a poly-rigid deformation on a volume and one or two AnatomicalStructureCollection objects. More...
class	SpineLocalization2DAlgorithm
	Localization algorithm that detects vertebrae and other structures in X-Ray images. More...
class	SpineMeshCurvatureAlgorithm
class	SpineMeshCurvatureController
struct	SpineAlgorithmWidget
struct	KeypointManipulator
struct	Spine2DModelNames
	Model identifiers and parameter names supported by the SpineLocalizatin2D algorithm,. More...
class	AtracsysTrackingStreamBase
	TrackingStream base class for all Atracsys tracking systems. More...
class	AtracsysRenderer
class	AtracsysMarkersWidget
class	NDITrackingController
	Stream algorithm controller to configure NDITrackingStreams. More...
class	NDITrackingStream
	Base class for NDI tracking streams (Polaris/Aurora and Ascension), which share the same controller. More...
struct	NDITrackingInstrumentInfo
	NDI instrument info. More...
class	PolarisAuroraTrackingStream
	TrackingStream wrapping the NDI Polaris/Aurora Tracking API. More...
class	ColorMapOptimization
	Provides color map optimization for textured mesh generation from RGB data. More...
class	DepthColorWarping
	DepthColorWarping provides functionality for warping between depth and color images using camera calibration and extrinsic parameters. More...
class	DepthMapToMeshAlgorithm
	DepthMapToMeshAlgorithm converts depth maps (optionally with color and mask images) into triangle meshes. More...
class	DepthMapToPointCloudAlgorithm
	DepthMapToPointCloudAlgorithm converts depth maps (optionally with color images) into point clouds. More...
class	LaserLocker
	Provides management and acquisition of laser locks for RGB-D sensors. More...
class	LaserManager
	Manages synchronization and coordination of laser states among multiple RGB-D sensors. More...
class	MVSTexturing
	Provides multi-view stereo (MVS) texturing for 3D meshes using RGB-D image sets. More...
class	MultiSensorCalibration
	Provides functionality for external calibration of multiple RGB-D sensors using markers. More...
class	PointCloudPlaneFittingAlgorithm
	Provides plane fitting and distance computation for point clouds. More...
class	PointCloudToDepthMapAlgorithm
	Provides conversion of a dense point cloud to a depth map. More...
class	RGBDCalibrationAlgorithm
	RGBDCalibrationAlgorithm estimates intrinsic and extrinsic calibration parameters for RGB-D camera systems. More...
class	RGBDDataComponent
	RGBDDataComponent stores all calibration and configuration parameters for an RGBD sensor. More...
class	RGBDIoAlgorithm
	Algorithm for opening and managing RGB-D data streams. More...
class	RGBDMultiSequence
	Collection of multiple synchronized or unsynchronized RGB-D sequences. More...
class	RGBDPlayback
	Playback of stored RGB-D sequences. More...
class	RGBDPlaybackExtractionAlgorithm
	Algorithm to extract depth images, color images, point clouds, and sequences from RGBDPlayback. More...
class	RGBDReconstructionCallback
	Callback interface for RGBDReconstructionAlgorithm events. More...
class	RGBDReconstructionAlgorithm
	Algorithm for surface reconstruction from RGB-D data streams. More...
class	RGBDRelocalization
	Algorithm for relocalization using RGB-D data. More...
class	RGBDSequence
	Interface for a single sequence of RGB-D images. More...
class	RGBDSequenceIoAlgorithm
	Algorithm for reading and writing RGB-D sequences. More...
class	RGBDStream
	Base class for RGB-D streams. More...
class	RGBDFrame
	Class for representing RGBD image. More...
class	RGBDStreamController
	Controller for RGBD Streams. More...
class	RGBDStreamFactory
	Factory for enumerating available RGB-D streams. More...
class	RGBDTumSequenceIoAlgorithm
	Algorithm for reading and writing RGB-D sequences in the Tum folder/file format. More...
class	Relocalization
	Interface for relocalization algorithms using RGB-D data, typically used in RGBDReconstructionAlgorithm. More...
class	RelocalizationStack
	RelocalizationStack coordinates multiple relocalization strategies to robustly estimate camera poses from RGBD images. More...
class	SensorController
	UI controller for configuring an RGB-D sensor stream. More...
class	SimulatorFrame
	Container for a rendered simulator frame of the SimulatorRenderer. More...
class	SimulatorRenderer
	Renderer for simulating RGB-D sensor output from 3D models. More...
class	SurfaceReconstruction
	Abstract interface for surface reconstruction from RGB-D data. More...
class	SurfaceReconstructionDataListener
class	SurfaceReconstructionData
	Data model for surface reconstruction. More...
class	SurfaceReconstructionGPU
	GPU-accelerated volumetric surface reconstruction from RGB-D data. More...
class	TexturingAlgorithm
	Algorithm for texturing 3D meshes using RGB-D image data. More...
class	SurfaceToVolumeRegistrationAlgorithm
	Algorithm for surface scan to volume registration. More...
class	KinectAzureStream
	Provides a high-level interface for streaming RGB-D data from Microsoft Kinect Azure sensors. More...
class	KinectAzureStreamRecordingAlgorithm
	Provides recording functionality for streams from Kinect Azure RGB-D sensors. More...
class	KinectAzureStreamPlaybackAlgorithm
	Provides playback functionality for MKV recordings from Microsoft Kinect Azure RGB-D sensors. More...
class	OpenNI2RGBDStream
	Provides a stream interface for RGB-D sensors using the OpenNI2 framework. More...
class	RealSenseStream
	Provides a stream interface for Intel RealSense RGB-D sensors. More...
class	OrbbecRGBDStream
	Provides a stream interface for Orbbec RGB-D sensors (starting from Astra+). More...

Typedefs
using	PropertyList = std::vector<Properties*>
template<typename... ArgTypes>
using	Signal = SignalImpl<false, ArgTypes...>
	Alias for a non-protected signal, which is reentrant but not thread-safe.
template<typename... ArgTypes>
using	ProtectedSignal = SignalImpl<true, ArgTypes...>
	Alias for a protected signal, which is thread-safe.
typedef MeshIterator< VertexIteratorImpl >	VertexIterator
typedef MeshIterator< FaceIteratorImpl >	FaceIterator
typedef MeshIteratorRel< VertexVertexIteratorImpl >	VertexVertexIterator
typedef MeshIteratorRel< VertexFaceIteratorImpl >	VertexFaceIterator
typedef MeshIteratorRel< FaceVertexIteratorImpl >	FaceVertexIterator
typedef MeshIteratorRel< FaceFaceIteratorImpl >	FaceFaceIterator
using	DisplayLayoutConfig = GUI::DisplayLayoutConfig
using	DisplayLayout = GUI::DisplayLayout
typedef std::pair< Qt::MouseButton, Qt::KeyboardModifiers >	MouseAction
typedef std::map< ViewActionType, std::vector< MouseAction > >	ViewActionMap
typedef DicomAlgorithmControllerFactory	DicomIoAlgorithmControllerFactory
using	FakeImageStreamAlgorithm = CreateStreamIoAlgorithm<FakeImageStream, true, true>
using	FakeTrackingStreamAlgorithm = CreateStreamIoAlgorithm<FakeTrackingStream, true, true>
typedef PlaybackImageStream	PlaybackStream
using	ImageSubstream = Substream<ImageStream>
	Dummy image substream for use in StreamGroups.
using	InstrumentUpdate = Flags<InstrumentModification>
	Flags type for instrument updates.
typedef TrackingStream	LiveTrackingStream
typedef IGTL::ParsedMessage	IgtlParsedMessage
typedef IGTL::Type	IgtlType
typedef IGTL::DeviceType	IgtlDeviceType
typedef IGTL::Connection	IgtlConnection
typedef IGTL::ConnectionIoAlgorithm	IgtlConnectionIoAlgorithm
typedef IGTL::CreateDeviceAlgorithm	IgtlCreateDeviceAlgorithm
typedef IGTL::CreateDataIoAlgorithm	IgtlCreateDataIoAlgorithm
typedef IGTL::CreateDeviceController	IgtlCreateDeviceAlgorithmController
typedef IGTL::DataDevice	IgtlDataDevice
typedef IGTL::Device	IgtlDevice
typedef IGTL::DeviceImpl	IgtlDeviceImpl
typedef IGTL::DeviceBlueprint	IgtlDeviceBlueprint
typedef IGTL::TypeFactory	IgtlTypeFactory
typedef IGTL::DeviceFactory	IgtlDeviceFactory
typedef IGTL::ImageData	IgtlImageData
typedef IGTL::IgtlImageOutStream	IgtlImageOutStream
typedef IGTL::IgtlImageStream	IgtlImageStream
typedef IGTL::MeshData	IgtlMeshData
typedef IGTL::IgtlPolyDataOutStream	IgtlPolyDataOutStream
typedef IGTL::IgtlPolyDataStream	IgtlPolyDataStream
typedef IGTL::TrackingMessage	IgtlTrackingMessage
typedef IGTL::IgtlTrackingOutStream	IgtlTrackingOutStream
typedef IGTL::IgtlTrackingStream	IgtlTrackingStream
using	CombinedTrackingStreamAlgorithm = CreateStreamAlgorithm<CombinedTrackingStream, true, true, true>
using	SmoothedTrackingStreamAlgorithm = CreateStreamAlgorithm<SmoothedTrackingStream, true, true, true>
using	Frame = TypedImage<unsigned char>
using	LandmarkPoint = vec3
using	LineMeasurement = Geometry::LineSegment
using	GeometricAnnotationPoints = std::variant<LandmarkPoint, Geometry::AlignedBox, LineMeasurement>
using	GeometricAnnotations = std::vector<std::vector<GeometricAnnotation>>
template<typename StoredObjType, typename GlObjType, typename DataType = AnatomicalStructure>
using	KeyValueStoreDisplayHelper = KeyValueStoreVisualiser<StoredObjType, GlObjType, DataType>
template<typename DataType>
using	KeyValueStoreDisplayHelperParent = KeyValueStoreVisualiserParent<DataType>
typedef std::vector< std::vector< std::tuple< vec3, double > > >	ClusterResult
using	LoadIdealSpineAlgorithm = LoadSpineTemplateAlgorithm
using	SpineDataProjectionAlgorithm = ASCProjectionAlgorithm
using	SpineDataProjectionController = ASCProjectionController
using	AtracsysSprytrackStream = SpryTrack::AtracsysTrackingStream
	Tracking stream for a Atracsys tracking system SpryTrack 180 and SpryTrack 300 connected via USB.
using	NDIAuroraTrackingStream = PolarisAuroraTrackingStream<NDISystemType::Aurora>
	Tracking stream for a NDI Aurora EM tracking system connected via USB.
using	NDIAuroraTrackingStreamAlgorithm = CreateStreamIoAlgorithm<NDIAuroraTrackingStream, false, false>
	Stream algorithm alias.
using	NDIPolarisSerialTrackingStream = PolarisAuroraTrackingStream<NDISystemType::PolarisSerial>
	Tracking stream for a NDI Polaris Vicra and Polaris Spectra optical tracking system connected via USB.
using	NDIPolarisSerialTrackingStreamAlgorithm = CreateStreamIoAlgorithm<NDIPolarisSerialTrackingStream, false, false>
	Stream algorithm alias.
using	NDIPolarisTrackingStream = PolarisAuroraTrackingStream<NDISystemType::PolarisVega>
	Tracking stream for a NDI Polaris Vega or Polaris Lyra optical tracking system connected via an ethernet network connection.
using	NDIPolarisTrackingStreamAlgorithm = CreateStreamIoAlgorithm<NDIPolarisTrackingStream, false, false>
	Stream algorithm alias.

Enumerations
enum class	ReductionMode { Lookup = 0 , Average = 1 , Minimum = 2 , Maximum = 3 }
	Mode for image reduction (e.g. downsampling, resampling, binning). More...
enum class	InterpolationMode { Nearest = 0 , Linear = 1 }
	Mode for image interpolation. More...
enum class	SpacingMode { Exact = 0 , Adjust = 1 }
	Mode for spacing adjustment, e.g. when the physical extent would change after resampling. More...
enum class	PaddingMode { Zero = 0 , Mirror = 1 , Clamp = 2 }
	Mode for image padding. More...
enum class	PixelType {   Byte = 0x1400 , UByte = 0x1401 , Short = 0x1402 , UShort = 0x1403 ,   Int = 0x1404 , UInt = 0x1405 , Float = 0x1406 , Double = 0x140A ,   HFloat = 0x140B }
	Pixel/voxel data type, numerical value equivalent to OpenGL defines.
enum class	TrackingCS { Tracker , Calibrated }
	Enumeration for the Tracking coordinate system, intended for use as tag in Transform. More...
enum class	GlobalCS { World , Data }
enum	ViewActionType {   PAN = 0 , ZOOMSLICE = 1 , ROTATESLICE3D = 2 , ROTATESLICE2D = 3 ,   SWEEPSLICE3D = 4 , SWEEPSLICE2D = 5 , ROTATE3D = 6 , ZOOM3D = 7 ,   WINDOW = 8 , BLEND = 9 }
	Basic actions which are applied on the views. More...
enum class	InstrumentModification { InstrumentModification::None = 0 , InstrumentModification::TrackingStateChanged = 1 << 0 , InstrumentModification::MainInstrumentChanged = 1 << 1 , InstrumentModification::TrackingListChanged = 1 << 2 }
	Bit flags indicating the type of instrument list modification. More...
enum	InstrumentTableConfiguration {   RenameInstrument = 1 << 0 , ActivateInstrument = 1 << 1 , SetMainInstrument = 1 << 2 , SelectInstrument = 1 << 3 ,   All = 0xFFFF }
	Bitfield enum for table settings. More...
enum class	Stage {   Intro , Pivoting , Rotation , Flip ,   None }
enum	Device { Device_CPU , Device_GL }
	Enumeration for different computation devices.
enum class	GeometricAnnotationKind : int { Landmark = 0 , BoundingBox = 1 , LineMeasurement = 2 }
enum class	ResourceLocation { LocalImFusionFile = 0 , DicomWeb = 1 , Unsupported = 99 }
	Remote project don't necessarily store everything on the server directly for download, but might reference a resource on another server, that we need to download. More...
enum class	SortingStrategy { Spline , NearestNeighbors , ZSorting }
enum class	VertebraType {   NONE , CERVICAL , THORACIC , LUMBAR ,   SACRAL }
enum class	NDISystemType { PolarisSerial , PolarisVega , Aurora }
	Type of NDI tracking system.

Functions
template<typename T>
bool	operator== (const Parameter< T > &param, const T &value)
template<typename T>
bool	operator== (const T &value, const Parameter< T > &param)
template<typename T>
bool	operator!= (const Parameter< T > &param, const T &value)
template<typename T>
bool	operator!= (const T &value, const Parameter< T > &param)
std::ostream &	operator<< (std::ostream &os, const PluginManager::Status &status)
bool	operator== (Anatomy lhs, Anatomy rhs)
bool	operator< (Anatomy lhs, Anatomy rhs)
std::istream &	operator>> (std::istream &in, BinarySerializable &bs)
	Deserializes a string in Base64 encoding using the BinarySerializable::loadFromBuffer() method.
std::ostream &	operator<< (std::ostream &out, const BinarySerializable &bs)
	Serializes to a string in Base64 encodin using the BinarySerializable::saveToBuffer() method.
PaddingMode	stringToPaddingMode (const std::string &s)
std::string	paddingModeToString (PaddingMode mode)
std::string	pixelTypeToString (PixelType type)
	Converts the PixelType to a std::string for printing.
bool	operator== (const ImageDescriptor &lhs, const ImageDescriptor &rhs) noexcept
	Performs an exact comparison of all members of the two ImageDescriptors.
bool	operator!= (const ImageDescriptor &lhs, const ImageDescriptor &rhs) noexcept
	Performs an exact comparison of all members of the two ImageDescriptors.
template<typename T>
Statistics	calculateStatistics (const std::vector< T > &values)
	calculate statistics of the provided vector
Statistics	calculateStatistics (const MemImage *image)
	calculate statistics of the provided image
std::vector< Statistics >	calculateStatisticsPerChannel (const MemImage *image)
	calculate statistics for each channel of the provided image
std::vector< std::unordered_map< int, Statistics > >	computeLabelStatistics (const SharedImageSet *sisImage, const std::vector< const SharedImageSet * > &sisLabelMaps, std::function< double(double)> intensityMapping, int channel=0, Progress *progress=nullptr)
	Collect the statistics for an image with multiple labels.
std::vector< std::unordered_map< int, Statistics > >	computeLabelStatistics (const SharedImageSet *sisImage, const std::vector< const SharedImageSet * > &sisLabelMaps, bool useRealWorldValues=false, int channel=0, Progress *progress=nullptr)
	If useRealWorldValues is true, calls computeLabelStatistics with a mapping for the first mapping in the RealWorldMappingDataComponent.
std::vector< std::unordered_map< int, Statistics > >	computeLabelStatisticsGPU (const SharedImageSet *sisImage, const std::vector< const SharedImageSet * > &sisLabelMaps, Progress *progress=nullptr)
	Collect the statistics for an image with with multiple labels.
PluginBase::Status	initLegacyImFusionPlugin (ImFusionPlugin &plugin)
	Helper function to implement legacy plugin initialization previously done by Framework::registerPlugin().
template<typename... Ts>
std::unique_ptr< ParameterWrapperBase >	makeCombinedParameterOptimization (Ts &&... args)
template<typename Scalar, int Dim>
PCA< Scalar, Dim >	computePCA (const std::vector< Eigen::Matrix< Scalar, Dim, 1 > > &points, bool scalePoints=true)
	Computes PCA on a vector of points. Optional point scaling for stability.
template<typename Scalar, int Dim>
PCA< Scalar, Dim >	computePCA (const Eigen::Matrix< Scalar, Eigen::Dynamic, Dim > &points, bool scalePoints=true)
	Computes PCA on a vector of points given by the rows of a matrix. Optional point scaling for stability.
double	computeTrackingDelay (const TrackingSequence &tr1, const TrackingSequence &tr2, double rotationWeight=1.0, double translationWeight=0.1)
	Computes the temporal offset between 2 tracking sequences describing the same real world motion.
template<typename T>
void	swap (TypedImage< T > &lhs, TypedImage< T > &rhs)
template<typename T, typename UnaryFunction>
void	forEachComponent (TypedImage< T > &image, UnaryFunction &&func)
	Apply an arbitrary function to each component of an image.
std::unique_ptr< SharedImageSet >	Radon2DForward ()
DisplayWidgetMulti::LayoutFeatures	operator| (DisplayWidgetMulti::LayoutFeatures a, DisplayWidgetMulti::LayoutFeatures b)
ParamControl *	createDefaultParamControl (const std::string &name, const PropertiesDetail::Param &controlledParamSpecs, QWidget *init=nullptr, QWidget *parent=nullptr)
	Creates the default ParamControl for the starting value, type, defaultValue and attributes given through controlledParamSpecs.
int	typeConvertToIGTLink (unsigned int imFusionType)
igtl::PolyDataMessage::Pointer	pointCloudToIgtl (const PointCloud &pc, const std::string &deviceName, const std::string &trackerAttributeName="")
igtl::PolyDataMessage::Pointer	meshToIgtl (const Mesh &mesh, const std::string &deviceName, const std::string &trackerAttributeName="")
std::unique_ptr< Mesh >	igtlToMesh (igtl::PolyDataMessage &msg)
bool	igtlToMesh (igtl::PolyDataMessage &msg, Mesh *mesh)
std::unique_ptr< PointCloud >	igtlToPointCloud (igtl::PolyDataMessage &msg)
bool	igtlToPointCloud (igtl::PolyDataMessage &msg, PointCloud *mesh)
std::optional< PixelType >	typeConvertToImFusion (const unsigned int igtlImageType)
mat4	igtlToMatrix (const igtl::TransformMessage &msg)
std::vector< TrackingInstrument >	igtlToInstruments (const igtl::TrackingDataMessage &msg)
double	igtlTimestampToMillisec (igtl::MessageBase &msg)
void	mat4ToIgtlMatrix (const ImFusion::mat4 &mat, igtl::Matrix4x4 &out)
ImFusion::mat4	igtlMatrixToMat4 (const igtl::Matrix4x4 &mat)
std::shared_ptr< MemImage >	msgToMemImageMap (const igtl::ImageMessage &imgMsg)
igtl::ImageMessage::Pointer	imageToIgtl (const MemImage &img, const std::string &deviceName, const mat4 &matrix, unsigned long long timestamp_ms)
std::vector< IGTL::DeviceBlueprint >	imageStreamBlueprints ()
std::vector< IGTL::DeviceBlueprint >	polyDataBlueprints ()
std::vector< IGTL::DeviceBlueprint >	trackingStreamBlueprints ()
ImageRegistration::PreprocessingOptions	operator| (ImageRegistration::PreprocessingOptions a, ImageRegistration::PreprocessingOptions b)
ImageRegistration::PreprocessingOptions	operator& (ImageRegistration::PreprocessingOptions a, ImageRegistration::PreprocessingOptions b)
ImageRegistration::PreprocessingOptions	operator~ (ImageRegistration::PreprocessingOptions a)
ImageMetadata	imageMetadataFromImageSet (const SharedImageSet &sis)
std::vector< std::string >	defaultDatasetGrouping (const std::string &patientId, const std::string &patientName, const std::string &studyInstanceUID, const std::string &studyDescription, const std::string &studyDate, const std::string &seriesInstanceUID, const std::string &seriesDescription, const std::string &seriesDate)
int	start (int argc, char **argv)
QIcon	geometricAnnotationKindIcon (GeometricAnnotationKind kind)
QString	geometricAnnotationKindName (GeometricAnnotationKind kind)
	Return a display string for the given kind.
const char *	getResourceLocationName (ResourceLocation loc)
std::optional< ResourceLocation >	resourceLocationFromString (const std::string &str)
void	applyAnimationSettings ()
std::optional< SettingsDialogResult >	settingsDialog (const Project *project, bool readOnly, std::shared_ptr< Network::AuthorizationProvider > authProvider, QWidget *parent=nullptr)
std::optional< SettingsDialogResult >	remoteProjectSettingsDialog (const std::string &serverUrl, std::shared_ptr< Network::AuthorizationProvider > authProvider, const std::unordered_set< std::string > &usedProjectNames, const std::string &serverVersion, QWidget *parent)
	Opens a dialog for creating a remote project.
PaintResultRects	genericPaintFunction (QPainter &painter, const QRect &rect, const std::optional< QColor > &background, QString name, QString licenseName, const std::vector< QImage > &images, const std::vector< TagValue > &tags, const std::vector< TagType > &tagSpec, const std::vector< IconInfo > &iconInfos, bool showTagText, int maxTagLines, bool current)
bool	applyDeformation (const AnatomicalStructureCollection &in, const ASCDeformation &def, AnatomicalStructureCollection &out, bool createMissingObjects=true, bool createMissingAnatomicalStructures=false)
	Applies the deformation specified in def to in, and stores the result in out.
ASCDeformation	averageDeformations (const std::vector< ASCDeformation > &vals, std::optional< std::vector< double > > weights, const AnatomicalStructureCollection *source)
ASCDeformation	averageDeformations (const std::vector< const ASCDeformation * > &vals, std::optional< std::vector< double > > weights, const AnatomicalStructureCollection *source)
AnatomicalStructureDeformation	operator* (const ScaledIso3 &mat, const AnatomicalStructureDeformation &def)
bool	applyDeformation (const AnatomicalStructure &in, const AnatomicalStructureDeformation &def, AnatomicalStructure &out, bool createMissingObjects=true)
	Applies a AnatomicalStructureDeformation to a anatomical structure.
bool	applyDeformation (const AnatomicalStructure &in, const ScaledIso3 &additionalLinearPart, const AnatomicalStructureDeformation &def, AnatomicalStructure &out, bool createMissingObjects=true)
	Version of applyDeformation with an additional linear pre-factor to apply to def for efficiency to avoid copies of def.
bool	applyDeformation (const AnatomicalStructureDeformation &in, const ScaledIso3 &prefactor, const AnatomicalStructureDeformation &def, AnatomicalStructureDeformation &out)
	"Applies" a deformation to another deformation.
bool	applyScaledIso3 (const SharedImageSet &in, const ScaledIso3 &def, SharedImageSet &out, const mat4 *initialMatrixToWorld=nullptr)
	Applies a ScaledIso3 to a SharedImageSet.
bool	applyScaledIso3 (const ImageDescriptorWorld &in, const ScaledIso3 &def, ImageDescriptorWorld &out, bool moveScaleToSpacing=false)
	Applies a ScaledIso3 to an ImageDescriptorWorld.
AnatomicalStructurePointwiseDeformation	averageDeformations (const std::vector< AnatomicalStructurePointwiseDeformation > &vals, std::optional< std::vector< double > > weights, std::variant< const Mesh *, const PointCloud *, const Graph *, const Spline *, std::monostate > source=std::monostate{})
	Average a set of AnatomicalStructure deformations Warning: this can introduce a rigid component into the nonlinear part of the deformation if source is not set.
AnatomicalStructureDeformation	averageDeformations (const std::vector< AnatomicalStructureDeformation > &vals, std::optional< std::vector< double > > weights, const AnatomicalStructure *source=nullptr)
	Warning: this can introduce a rigid component into the nonlinear part of the deformation if source is not set.
AnatomicalStructurePointwiseDeformation	operator* (const ScaledIso3 &mat, const AnatomicalStructurePointwiseDeformation &def)
	Left group action by the group of scaled isometries.
bool	applyDeformation (const Mesh &in, const AnatomicalStructurePointwiseDeformation &def, Mesh &out)
	Applies a AnatomicalStructurePointwiseDeformation to a Mesh.
bool	applyDeformation (const Mesh &in, const ScaledIso3 &prefactor, const AnatomicalStructurePointwiseDeformation &def, Mesh &out)
	Faster way of applying AnatomicalStructurePointwiseDeformation that has a (linear) pre-factor.
bool	applyDeformation (const PointCloud &in, const AnatomicalStructurePointwiseDeformation &def, PointCloud &out)
	Applies a AnatomicalStructurePointwiseDeformation to a PointCloud object.
bool	applyDeformation (const Graph &in, const AnatomicalStructurePointwiseDeformation &def, Graph &out)
	Applies a AnatomicalStructurePointwiseDeformation to a Graph object.
bool	applyDeformation (const Spline &in, const AnatomicalStructurePointwiseDeformation &def, Spline &out)
	Applies a AnatomicalStructurePointwiseDeformation to a Spline object.
mat4	applyDeformation (const ScaledIso3 &def, const mat4 &matrixToWorld)
template<typename StoredT>
bool	isValid (const StoredT &val)
ScaledIso3	averageScaledIso3 (const std::vector< ScaledIso3 > &vals, std::optional< std::vector< double > > weights)
	Compute a weighted combination of ScaledIso3 objects.
template<typename T>
auto	operator* (double d, const VertexExpr< T > &expr)
template<typename T>
auto	operator* (const mat4 &matrix, const VertexExpr< T > &expr)
std::vector< int64_t >	hungarianAssignment (Eigen::MatrixXf const &costs, double nullCost, bool minimize=true)
	Calculates the optimal assignment for a matching problem.
std::map< int, std::vector< vec3 > >	kmeansOnLabel (SharedImageSet &labels)
std::vector< int >	splineFilter (std::vector< std::tuple< vec3, double > > clusters)
bool	hasMissingVertebraHeuristic (SpineData *spineData)
std::unique_ptr< SharedImageSet >	segmentSpine (SharedImageSet &vol, std::string localisationModelPath, std::string segmentationModelPath)
void	logImg (SharedImageSet *img, std::string path, std::string filename)
void	printCSV (const std::string &file, const std::string &header, std::function< void(std::ofstream &)> printFunc, bool append)
void	printMetricToCsv (std::string file, bool append, ModelEvalLog model, std::vector< std::string > labelVals)
AnatomyPlugin::StyleSheet	defaultColorfulSpineStyleSheet ()
std::ostream &	operator<< (std::ostream &os, const ImFusion::RGBDStream::PixelFormat &pf)
	Output stream operator for PixelFormat.
std::ostream &	operator<< (std::ostream &os, const ImFusion::RGBDStream::FrameInfo &fi)
	Output stream operator for FrameInfo.
std::unique_ptr< TrackingSequence >	trackingSequenceInterpolator (const TrackingSequence &input, double deltaT=0.01)
	Generates a new tracking sequence by interpolating the poses provided in the input sequence.
std::unique_ptr< TrackingSequence >	trackingSequenceInterpolatorWithMinVelInChart (const TrackingSequence &input, double deltaT=0.01)
std::unique_ptr< TrackingSequence >	trackingSequenceInterpolatorWithMinVelJerkInChart (const TrackingSequence &input, double k, double deltaT=0.01)

Variables
template<typename T>
const int	Morpho< T >::BLOCK_BASE
const int	ClFastMarching2D = 1
const int	ClFastMarching3D = 2
constexpr int	GeometricAnnotationKindLast = int(GeometricAnnotationKind::LineMeasurement)
	Highest possible value in the above enum for bounds checking.
constexpr int	ResourceLocationLastSupported = int(ResourceLocation::DicomWeb)
template<typename T>
Singleton< T > *	Singleton< T >::m_instance = nullptr
constexpr char	defaultPrefix [] = "ImFusion."
constexpr char	endplatePrefix [] = "ImFusion.EP."
constexpr int	N_VERTEBRA_TYPES = 7 + 12 + 6 + 2

Typedef Documentation

PlaybackStream

typedef PlaybackImageStream ImFusion::PlaybackStream

Deprecated

"PlaybackStream has been renamed to PlaybackImageStream"

LiveTrackingStream

typedef TrackingStream ImFusion::LiveTrackingStream

Deprecated

"LiveTrackingStream has been renamed to TrackingStream"

IgtlParsedMessage

typedef IGTL::ParsedMessage ImFusion::IgtlParsedMessage

Deprecated

IgtlType

typedef IGTL::Type ImFusion::IgtlType

Deprecated

IgtlDeviceType

typedef IGTL::DeviceType ImFusion::IgtlDeviceType

Deprecated

IgtlConnection

typedef IGTL::Connection ImFusion::IgtlConnection

Deprecated

IgtlConnectionIoAlgorithm

typedef IGTL::ConnectionIoAlgorithm ImFusion::IgtlConnectionIoAlgorithm

Deprecated

IgtlCreateDeviceAlgorithm

typedef IGTL::CreateDeviceAlgorithm ImFusion::IgtlCreateDeviceAlgorithm

Deprecated

IgtlCreateDataIoAlgorithm

typedef IGTL::CreateDataIoAlgorithm ImFusion::IgtlCreateDataIoAlgorithm

Deprecated

IgtlCreateDeviceAlgorithmController

typedef IGTL::CreateDeviceController ImFusion::IgtlCreateDeviceAlgorithmController

Deprecated

IgtlDataDevice

typedef IGTL::DataDevice ImFusion::IgtlDataDevice

Deprecated

IgtlDevice

typedef IGTL::Device ImFusion::IgtlDevice

Deprecated

IgtlDeviceImpl

typedef IGTL::DeviceImpl ImFusion::IgtlDeviceImpl

Deprecated

IgtlDeviceBlueprint

typedef IGTL::DeviceBlueprint ImFusion::IgtlDeviceBlueprint

Deprecated

IgtlTypeFactory

typedef IGTL::TypeFactory ImFusion::IgtlTypeFactory

Deprecated

IgtlDeviceFactory

typedef IGTL::DeviceFactory ImFusion::IgtlDeviceFactory

Deprecated

IgtlImageData

typedef IGTL::ImageData ImFusion::IgtlImageData

Deprecated

IgtlImageOutStream

typedef IGTL::IgtlImageOutStream ImFusion::IgtlImageOutStream

Deprecated

IgtlImageStream

typedef IGTL::IgtlImageStream ImFusion::IgtlImageStream

Deprecated

IgtlMeshData

typedef IGTL::MeshData ImFusion::IgtlMeshData

Deprecated

IgtlPolyDataOutStream

typedef IGTL::IgtlPolyDataOutStream ImFusion::IgtlPolyDataOutStream

Deprecated

IgtlPolyDataStream

typedef IGTL::IgtlPolyDataStream ImFusion::IgtlPolyDataStream

Deprecated

IgtlTrackingMessage

typedef IGTL::TrackingMessage ImFusion::IgtlTrackingMessage

Deprecated

IgtlTrackingOutStream

typedef IGTL::IgtlTrackingOutStream ImFusion::IgtlTrackingOutStream

Deprecated

IgtlTrackingStream

typedef IGTL::IgtlTrackingStream ImFusion::IgtlTrackingStream

Deprecated

Enumeration Type Documentation

ReductionMode

enum class ImFusion::ReductionMode

strong

Mode for image reduction (e.g. downsampling, resampling, binning).

Enumerator
Lookup	Nearest neighbor look-up, i.e. no reduction at all.
Average	Average intensity within the reduction box.
Minimum	Minimum intensity within the reduction box.
Maximum	Maximum intensity within the reduction box.

InterpolationMode

enum class ImFusion::InterpolationMode

strong

Mode for image interpolation.

Enumerator
Nearest	Nearest neighbor look-up, i.e. no interpolation.
Linear	Linear interpolation.

SpacingMode

enum class ImFusion::SpacingMode

strong

Mode for spacing adjustment, e.g. when the physical extent would change after resampling.

Enumerator
Exact	A desired spacing is used as it, without any adjustment.
Adjust	A desired spacing is automatically adjusted, e.g. to keep an image's extent constant.

PaddingMode

enum class ImFusion::PaddingMode

strong

Mode for image padding.

Enumerator
Zero	Pad with zeroes.
Mirror	Pad by mirroring the image content.
Clamp	Pad by clamping to the image border.

TrackingCS

enum class ImFusion::TrackingCS

strong

Enumeration for the Tracking coordinate system, intended for use as tag in Transform.

Enumerator
Tracker	The tracking target in the convention of the system, e.g. center of an optical marker, the flange of a robot end effector.
Calibrated	The coordinate system of the object to be tracked, rigidly attached to the tracking target. For example the tip of a tracked ultrasound probe, the tip of a stylus.

InstrumentTableConfiguration

enum ImFusion::InstrumentTableConfiguration

Bitfield enum for table settings.

Enumerator
RenameInstrument	Enables to rename the TrackingInstruments (must be supported by the TrackingStream).
ActivateInstrument	Enables to activate/deactivate TrackingInstruments.
SetMainInstrument	Enables to specify the main TrackingInstrument (must be supported by the TrackingStream).
SelectInstrument	Enables to select a TrackingInstrument (emits signal upon selection).

ResourceLocation

enum class ImFusion::ResourceLocation

strong

Remote project don't necessarily store everything on the server directly for download, but might reference a resource on another server, that we need to download.

Enumerator
LocalImFusionFile	Can be downloaded directly from the server as ImFusionFile.
DicomWeb	A DICOMweb compatible URL that we need to fetch from another server.
Unsupported	Probably the server is newer than this client.

Function Documentation

operator==()

bool ImFusion::operator== ( const ImageDescriptor & lhs, const ImageDescriptor & rhs )

noexcept

Performs an exact comparison of all members of the two ImageDescriptors.

You can use ImageDescriptor::isApprox() to allow for some numerical tolerance when comparing floating point members or to perform a partial comparison.

operator!=()

bool ImFusion::operator!= ( const ImageDescriptor & lhs, const ImageDescriptor & rhs )

noexcept

Performs an exact comparison of all members of the two ImageDescriptors.

You can use ImageDescriptor::isApprox() to allow for some numerical tolerance when comparing floating point members or to perform a partial comparison.

computeLabelStatistics()

std::vector< std::unordered_map< int, Statistics > > ImFusion::computeLabelStatistics	(	const SharedImageSet *	sisImage,
		const std::vector< const SharedImageSet * > &	sisLabelMaps,
		std::function< double(double)>	intensityMapping,
		int	channel = 0,
		Progress *	progress = nullptr )

Collect the statistics for an image with multiple labels.

Parameters

sisImage	The image whose statistics will be collected.
sisLabelMaps	A collection of label maps. Each label map is assumed to be single channel and of type UBYTE.
intensityMapping	Optional mapping of intensity values. Called for each pixel with the intensity in Original Values.
progress	An optional progress reporter.

Returns

The image statistics for each of the given labels.

computeLabelStatisticsGPU()

std::vector< std::unordered_map< int, Statistics > > ImFusion::computeLabelStatisticsGPU	(	const SharedImageSet *	sisImage,
		const std::vector< const SharedImageSet * > &	sisLabelMaps,
		Progress *	progress = nullptr )

Collect the statistics for an image with with multiple labels.

Parameters

sisImage	The image whose statistics will be collected.
sisLabelMaps	A collection of label maps. Each label map is assumed to be single channel and of type UBYTE.
useRealWorldValues	Whether to convert image intensity values to real-world values. (cf. RealWorldMappingDataComponent)
progress	An optional progress reporter.

Returns

The image statistics for each of the given labels.

initLegacyImFusionPlugin()

PluginBase::Status ImFusion::initLegacyImFusionPlugin

(

ImFusionPlugin &

plugin

)

Helper function to implement legacy plugin initialization previously done by Framework::registerPlugin().

Conducts a license check, registers factories, and workspace conversion functions of plugin.

computeTrackingDelay()

double ImFusion::computeTrackingDelay	(	const TrackingSequence &	tr1,
		const TrackingSequence &	tr2,
		double	rotationWeight = 1.0,
		double	translationWeight = 0.1 )

Computes the temporal offset between 2 tracking sequences describing the same real world motion.

The return value x is defined such that tr1.matrix(t+x) and tr2.matrix(t) match as closely as possible. This method requires that either both streams have timestamps or neither has (in which case dt=1 is assumed). The optional weight parameters control the impact of different movement types on the result. When choosing weights, consider that the used rotations are in degrees and the translations in mm.

forEachComponent()

template<typename T, typename UnaryFunction>

void ImFusion::forEachComponent	(	TypedImage< T > &	image,
		UnaryFunction &&	func )

Apply an arbitrary function to each component of an image.

Parameters

image	The TypedImage<T> to which the function should be applied.
func	The function to be applied to each component of the image.

Note

The signature of the given function should take a reference to an element of type T. i.e. void func(T& t); or void func(const T& t);

createDefaultParamControl()

ParamControl * ImFusion::createDefaultParamControl	(	const std::string &	name,
		const PropertiesDetail::Param &	controlledParamSpecs,
		QWidget *	init = nullptr,
		QWidget *	parent = nullptr )

Creates the default ParamControl for the starting value, type, defaultValue and attributes given through controlledParamSpecs.

If the type does not have an explicit default ParamControl, StringParamControl is used. If a widget is passed, the ParamControl will use that widget instead of creating a new one. However, the widget will only be used if it is compatible to the widget type of the ParamControl (i.e. if it can be dynamic_cast to the required type). The ParamControl does not own its widget, e.g. it must be re-parented to some other QWidget or deleted manually. For an optional ParamType, controlledParamSpecs.defaultValue will provide a default value for its inner ParamControl.

typeConvertToIGTLink()

int ImFusion::typeConvertToIGTLink

(

unsigned int

imFusionType

)

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

pointCloudToIgtl()

igtl::PolyDataMessage::Pointer ImFusion::pointCloudToIgtl	(	const PointCloud &	pc,
		const std::string &	deviceName,
		const std::string &	trackerAttributeName = "" )

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

meshToIgtl()

igtl::PolyDataMessage::Pointer ImFusion::meshToIgtl	(	const Mesh &	mesh,
		const std::string &	deviceName,
		const std::string &	trackerAttributeName = "" )

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

igtlToMesh() [1/2]

std::unique_ptr< Mesh > ImFusion::igtlToMesh

(

igtl::PolyDataMessage &

msg

)

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

igtlToMesh() [2/2]

bool ImFusion::igtlToMesh	(	igtl::PolyDataMessage &	msg,
		Mesh *	mesh )

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

igtlToPointCloud() [1/2]

std::unique_ptr< PointCloud > ImFusion::igtlToPointCloud

(

igtl::PolyDataMessage &

msg

)

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

igtlToPointCloud() [2/2]

bool ImFusion::igtlToPointCloud	(	igtl::PolyDataMessage &	msg,
		PointCloud *	mesh )

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

typeConvertToImFusion()

std::optional< PixelType > ImFusion::typeConvertToImFusion

(

const unsigned int

igtlImageType

)

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

igtlToMatrix()

mat4 ImFusion::igtlToMatrix

(

const igtl::TransformMessage &

msg

)

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

igtlToInstruments()

std::vector< TrackingInstrument > ImFusion::igtlToInstruments

(

const igtl::TrackingDataMessage &

msg

)

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

igtlTimestampToMillisec()

double ImFusion::igtlTimestampToMillisec

(

igtl::MessageBase &

msg

)

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

mat4ToIgtlMatrix()

void ImFusion::mat4ToIgtlMatrix	(	const ImFusion::mat4 &	mat,
		igtl::Matrix4x4 &	out )

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

igtlMatrixToMat4()

ImFusion::mat4 ImFusion::igtlMatrixToMat4

(

const igtl::Matrix4x4 &

mat

)

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

msgToMemImageMap()

std::shared_ptr< MemImage > ImFusion::msgToMemImageMap

(

const igtl::ImageMessage &

imgMsg

)

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

imageToIgtl()

igtl::ImageMessage::Pointer ImFusion::imageToIgtl	(	const MemImage &	img,
		const std::string &	deviceName,
		const mat4 &	matrix,
		unsigned long long	timestamp_ms )

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

imageStreamBlueprints()

std::vector< IGTL::DeviceBlueprint > ImFusion::imageStreamBlueprints ( )

inline

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

polyDataBlueprints()

std::vector< IGTL::DeviceBlueprint > ImFusion::polyDataBlueprints ( )

inline

Deprecated

"IGTL conversion functions have been moved to ImFusion::IGTL"

remoteProjectSettingsDialog()

std::optional< SettingsDialogResult > ImFusion::remoteProjectSettingsDialog	(	const std::string &	serverUrl,
		std::shared_ptr< Network::AuthorizationProvider >	authProvider,
		const std::unordered_set< std::string > &	usedProjectNames,
		const std::string &	serverVersion,
		QWidget *	parent )

Opens a dialog for creating a remote project.

The project is not created on the server yet, but only it's configuration is returned.

applyDeformation() [1/7]

bool ImFusion::applyDeformation	(	const AnatomicalStructureCollection &	in,
		const ASCDeformation &	def,
		AnatomicalStructureCollection &	out,
		bool	createMissingObjects = true,
		bool	createMissingAnatomicalStructures = false )

Applies the deformation specified in def to in, and stores the result in out.

Parameters

createMissingAnatomicalStructures

If true, creates missing AnatomicalStructures in out that are present in in based on the global linear part of the deformation.

createMissingObjects

If true, creates missing objects (points, meshes,... etc) in out that are present in in based on the linear part of the deformation. The exception to the above is if the output structure is empty and createMissingAnatomicalStructure is false. In this case, missing structures in that output structure are only created if the deformation contains an AnatomicalStructureDeformation for the structure in question. If the "transform_behavior" parameter is set in the attribute of an AnatomicalStructure in in, the deformation is only applied if the transform_behavior is not "Frozen".

applyDeformation() [2/7]

bool ImFusion::applyDeformation	(	const AnatomicalStructure &	in,
		const AnatomicalStructureDeformation &	def,
		AnatomicalStructure &	out,
		bool	createMissingObjects = true )

Applies a AnatomicalStructureDeformation to a anatomical structure.

Here in and out can be the same object If they are not the same object, they should have the same shape. Returns true on success If createMissingObjects is true, missing objects that are present in in are created in out

applyDeformation() [3/7]

bool ImFusion::applyDeformation	(	const AnatomicalStructureDeformation &	in,
		const ScaledIso3 &	prefactor,
		const AnatomicalStructureDeformation &	def,
		AnatomicalStructureDeformation &	out )

"Applies" a deformation to another deformation.

Here in and out can be the same object

applyScaledIso3() [1/2]

bool ImFusion::applyScaledIso3	(	const SharedImageSet &	in,
		const ScaledIso3 &	def,
		SharedImageSet &	out,
		const mat4 *	initialMatrixToWorld = nullptr )

Applies a ScaledIso3 to a SharedImageSet.

Here in and out can be the same object Returns true on success If initialMatrixToWorld is not nullptr, the first image of the volume will be given this initial transformation before the deformation is applied. For subsequent images, the relative transformation between the first image and initialMatrix is applied.

applyScaledIso3() [2/2]

bool ImFusion::applyScaledIso3	(	const ImageDescriptorWorld &	in,
		const ScaledIso3 &	def,
		ImageDescriptorWorld &	out,
		bool	moveScaleToSpacing = false )

Applies a ScaledIso3 to an ImageDescriptorWorld.

if moveScaleToSpacing is true, the scale part of the transformation is applied to the spacing of the images.

applyDeformation() [4/7]

bool ImFusion::applyDeformation	(	const Mesh &	in,
		const AnatomicalStructurePointwiseDeformation &	def,
		Mesh &	out )

Applies a AnatomicalStructurePointwiseDeformation to a Mesh.

Here in and out can be the same object Returns true on success

applyDeformation() [5/7]

bool ImFusion::applyDeformation	(	const PointCloud &	in,
		const AnatomicalStructurePointwiseDeformation &	def,
		PointCloud &	out )

Applies a AnatomicalStructurePointwiseDeformation to a PointCloud object.

Here in and out can be the same object Returns true on success

applyDeformation() [6/7]

bool ImFusion::applyDeformation	(	const Graph &	in,
		const AnatomicalStructurePointwiseDeformation &	def,
		Graph &	out )

Applies a AnatomicalStructurePointwiseDeformation to a Graph object.

Here in and out can be the same object Returns true on success

applyDeformation() [7/7]

bool ImFusion::applyDeformation	(	const Spline &	in,
		const AnatomicalStructurePointwiseDeformation &	def,
		Spline &	out )

Applies a AnatomicalStructurePointwiseDeformation to a Spline object.

Here in and out can be the same object Returns true on success

trackingSequenceInterpolator()

std::unique_ptr< TrackingSequence > ImFusion::trackingSequenceInterpolator	(	const TrackingSequence &	input,
		double	deltaT = 0.01 )

Generates a new tracking sequence by interpolating the poses provided in the input sequence.

This function creates a new tracking sequence that smoothly interpolates between the poses contained in the input sequence. The interpolation's characteristics can be adjusted using the parameters provided, allowing for control over the smoothness and fidelity of the resulting sequence to the input.

Parameters

input	The input tracking sequence containing the poses to interpolate.
straightnessFactor	Controls the smoothness of the output sequence. A smaller value results in a smoother, more curved output, while a larger value leads to a straighter path.
nglp	Specifies the degree of the interpolating polynomial plus one. For example, a value of 9 results in a polynomial of degree 8. This parameter determines the mathematical complexity of the interpolation model, with higher degrees allowing for more complex paths that can more closely follow the input poses.
continuityDegree	Determines the desired degree of continuity of the output sequence. A value of 0 means that velocity, acceleration, jerk, etc., will be discontinuous. A value of 1 ensures continuous velocity but discontinuous acceleration, jerk, etc. Higher values increase the continuity of higher-order derivatives, which can lead to smoother motion at the expense of computational complexity.
numberOfInternalFreeWaypoints	Specifies the number of additional free waypoints to insert between the input waypoints. Increasing this number allows for more degrees of freedom in the optimization process, potentially leading to a better approximation of the desired path but also increasing the computational cost.

Returns

A unique pointer to the newly created tracking sequence, which represents the interpolated path based on the input sequence and the specified parameters.

Note

The function's performance and the quality of the resulting interpolation are influenced by the choice of parameters. It is recommended to experiment with different values to find the optimal balance for the specific application. The size of the output TrackingSequence is nglp*(input.size() + (input.size() - 1) * numberOfInternalFreeWaypoints);