#include <AnatomyPlugin/include/ImFusion/AnatomyPlugin/ASCIoAlgorithm.h>

Algorithm to import/export AnatomicalStructureCollections to .imf or .zip files. More...

Inheritance diagram for ASCIoAlgorithm:

Detailed Description

Algorithm to import/export AnatomicalStructureCollections to .imf or .zip files.

The file's extension set via setLocation() controls the target format of the algorithm.

imf: The proprietary ImFusionFile format. (only supports full import/export at the moment)
zip: An archive containing the exported data in standard file formats (e.g. nii, stl and json) (supports partial import/export of meshes and/or images)

Public Member Functions
	ASCIoAlgorithm (const AnatomicalStructureCollection &asc)
	Create an algorithm instance for exporting the AnatomicalStructureCollection to an archive.

	ASCIoAlgorithm ()
	Create an algorithm instance for importing an AnatomicalStructureCollection from an archive.

std::vector< std::string >	supportedFileExtensions () const override
	Return supported file extensions (for file based IO)

std::string	suggestedSaveFileName () const override
	Return a file name proposal (for file based write)

void	configure (const Properties *p) override
	Set one or multiple properties.

void	configuration (Properties *p) const override
	Retrieve the properties of this object.

void	compute () override
	Execute the algorithm.

OwningDataList	takeOutput () override
	Return any new Data that was created by the Algorithm during the last call to compute().

Public Member Functions inherited from IoAlgorithm
	IoAlgorithm (IoMode ioMode, int locationType)
	Constructor for initializing IO algorithm.

virtual IoMode	ioMode () const
	Return IO mode.

virtual bool	fail (int *errorCode=nullptr) const

int	status () const override
	Indicates the status of the last call to compute().

virtual int	supportedLocations () const
	Return combination of supported location types from LocationType enum.

virtual void	setLocation (const std::string &location)
	Set location for subsequent loading/saving.

virtual std::string	location () const
	Get location for loading/saving.

void	configure (const Properties *p) override
	Set one or multiple properties.

void	configuration (Properties *p) const override
	Retrieve the properties of this object.

std::unique_ptr< Properties >	userOptions (bool includeReadOptions, bool includeWriteOptions) const
	Convenience method to retrieve all properties from this IoAlgorithm that are tagged as user options to be configured during load/save.

void	configureFromGlobalSettings ()
	Convenience method to configure the algorithm's user options with the values stored in the global settings.

Public Member Functions inherited from Algorithm
	Algorithm ()
	Default constructor will registers a single "compute" action that calls compute() and returns status().

virtual void	setProgress (Progress *progress)
	Sets a Progress interface the algorithm can use to notify observers about its computing progress.

Progress *	progress () const
	Returns the progress interface if set.

virtual bool	survivesDataDeletion (const Data *) const
	Indicates whether the algorithm can handle (partial) deletion of the specified data, by default this checks whether the data is in the input list.

const FactoryInfo &	factoryInfo () const
	Returns the record describing how this Algorithm was instantiated by the AlgorithmFactory.

void	setFactoryInfo (const FactoryInfo &value)
	Sets the record describing how this Algorithm was instantiated by the AlgorithmFactory.

Status	runAction (const std::string &id)
	Run the action with name `id` if it exists.

const std::vector< Action > &	actions ()
	Get a mapping from Action id to Action as registered in this algorithm.

Public Member Functions inherited from Configurable
virtual void	configureDefaults ()
	Retrieve the properties of this object, replaces values with their defaults and sets it again.

void	registerParameter (ParameterBase *param)
	Register the given Parameter or SubProperty, so that it will be configured during configure()/configuration().

void	unregisterParameter (const ParameterBase *param)
	Remove the given Parameter or SubProperty from the list of registered parameters.

	Configurable (const Configurable &rhs)

	Configurable (Configurable &&rhs) noexcept

Configurable &	operator= (const Configurable &)

Configurable &	operator= (Configurable &&) noexcept

Static Public Member Functions
static bool	createCompatible (const DataList &data, Algorithm **a=nullptr)

Static Public Member Functions inherited from IoAlgorithm
static std::unique_ptr< IoAlgorithm >	createFromLastDataSource (const DataSourceComponent &dsc)
	Virtual constructor that creates the IoAlgorithm recorded last in the DataSourceComponent.

Static Public Member Functions inherited from Algorithm
static bool	createCompatible (const DataList &data, Algorithm **a=nullptr)
	Factory function to check algorithm compatibility with input data and optionally instantiate it.

Public Attributes
Parameter< bool >	p_includeMeshes = {"includeMeshes", true, *this}
	Controls whether to include meshes in the import/export. (only .zip files)

Parameter< bool >	p_includeImages = {"includeImages", true, *this}
	Controls whether to include images in the import/export. (only .zip files)

Public Attributes inherited from Algorithm
Signal	signalOutputChanged
	Signal should be emitted by Algorithms when their output/result has changed.

Signal	signalParametersChanged
	Signal should be emitted by Algorithms when their parameter configuration has changed.

Public Attributes inherited from Configurable
Signal	signalParametersChanged
	Emitted whenever one of the registered Parameters' or SubPropertys' `signalValueChanged` signal was emitted.

Additional Inherited Members
Public Types inherited from IoAlgorithm
enum	IoMode { Read = 0 , Write = 1 }

enum	LocationType { File = 1 , Folder = 2 , URI = 4 , OpenIGTLink = 8 , Device = 16 }

Public Types inherited from Algorithm
enum	Status { Unknown = -1 , Success = 0 , Error = 1 , InvalidInput , IncompleteInput , OutOfMemoryHost , OutOfMemoryGPU , UnsupportedGPU , UnknownAction , AbortedByUser , User = 1000 }
	Status codes. More...

Protected Member Functions inherited from IoAlgorithm
void	recordToDataSourceComponent (Data &data, int indexInFile)
	Append the current configuration of the IoAlgorithm to the DataSourceComponent of a data.

Protected Member Functions inherited from Algorithm
void	loadDefaults ()

void	registerAction (const std::string &id, const std::string &guiName, const std::function< Algorithm::Status(void)> &action)
	Register an action to be run via runAction.

template<typename D>
void	registerAction (const std::string &id, const std::string &guiName, Algorithm::Status(D::*action)(void))
	Template version of runAction that can be used with a pointer to a member function.

void	registerAction (const Action &action)
	Register an action.

Protected Attributes inherited from IoAlgorithm
std::string	m_location

IoMode	m_ioMode

int	m_locationType

bool	m_fail

Protected Attributes inherited from Algorithm
std::string	m_name
	Algorithm name.

Progress *	m_progress = nullptr
	Non-owing pointer to a progress interface. May be a nullptr.

FactoryInfo	m_factoryInfo = {}
	Record describing how this algorithm was instantiated by the AlgorithmFactory.

int	m_status = Status::Unknown
	Algorithm status after last call to compute()

std::vector< Action >	m_actions
	Map of key given by the id of the action, of the available actions of this algorithm.

Protected Attributes inherited from Configurable
std::vector< Param >	m_params
	List of all registered Parameter and SubProperty instances.

Member Function Documentation

◆ supportedFileExtensions()

std::vector< std::string > supportedFileExtensions ( ) const

overridevirtual

Return supported file extensions (for file based IO)

Reimplemented from IoAlgorithm.

◆ suggestedSaveFileName()

std::string suggestedSaveFileName ( ) const

overridevirtual

Return a file name proposal (for file based write)

Reimplemented from IoAlgorithm.

◆ configure()

void configure ( const Properties * p )

overridevirtual

Set one or multiple properties.

Reimplemented from Configurable.

◆ configuration()

void configuration ( Properties * p ) const

overridevirtual

Retrieve the properties of this object.

Reimplemented from Configurable.

◆ compute()

void compute ( )

overridevirtual

Execute the algorithm.

Implements Algorithm.

◆ takeOutput()

OwningDataList takeOutput ( )

overridevirtual

Return any new Data that was created by the Algorithm during the last call to compute().

Reimplemented from Algorithm.

The documentation for this class was generated from the following file:

AnatomyPlugin/include/ImFusion/AnatomyPlugin/ASCIoAlgorithm.h

Detailed Description

Public Member Functions

Static Public Member Functions

Public Attributes

Additional Inherited Members

Member Function Documentation

◆ supportedFileExtensions()

◆ suggestedSaveFileName()

◆ configure()

◆ configuration()

◆ compute()

◆ takeOutput()