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ImFusion C++ SDK 4.5.0
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ImFusion C++ SDK 4.5.0
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#include <ImFusion/GL/GlVesselnessFilter.h>
Computes a multi-scale vesselness measure based on Frangi's filter. More...
Computes a multi-scale vesselness measure based on Frangi's filter.
The method is based on analysing the hessian eigenvalues computed at each voxel at multiple scales. The likelihood that a given voxel belongs to a vessel-like structure is formulated as a function of the hessian eigenvalues (Frangi's score).
The multi-scale analysis is based on space-scale derivatives theory. Instead of resampling the image at the desired scale and computing the hessian, one smooths the image with a Gauss kernel with a size of the corresponding scale and then computes the derivative. Since Gauss convolutions commute with derivatives, one can simply filter the image with a derivative of the Gauss kernel at the desired scale.
The final vesselness score is obtained by maxing the set of scores for each scale.
A. Frangi et al. "Multiscale vessel enhancement filtering", MICCAI '98
Public Member Functions | |
| GlVesselnessFilter (const std::vector< SharedImageSet * > &inputVolumes) | |
| Constructor. | |
| ~GlVesselnessFilter () override | |
| Destructor. | |
| virtual void | compute (const std::vector< GlImage > &imgsIn, GlImage &imgOut) |
| Executes this algorithm on imgIn and writes the result to imgOut. | |
| Public Member Functions inherited from ImFusion::Algorithm | |
| Algorithm () | |
| Default constructor will registers a single "compute" action that calls compute() and returns status(). | |
| virtual void | setProgress (Progress *progress) |
| Sets a Progress interface the algorithm can use to notify observers about its computing progress. | |
| Progress * | progress () const |
| Returns the progress interface if set. | |
| virtual int | status () const |
| Indicates the status of the last call to compute(). | |
| virtual bool | survivesDataDeletion (const Data *) const |
| Indicates whether the algorithm can handle (partial) deletion of the specified data, by default this checks whether the data is in the input list. | |
| const FactoryInfo & | factoryInfo () const |
| Returns the record describing how this Algorithm was instantiated by the AlgorithmFactory. | |
| void | setFactoryInfo (const FactoryInfo &value) |
| Sets the record describing how this Algorithm was instantiated by the AlgorithmFactory. | |
| Status | runAction (const std::string &id) |
| Run the action with name id if it exists. | |
| const std::vector< Action > & | actions () |
| Get a mapping from Action id to Action as registered in this algorithm. | |
| Public Member Functions inherited from ImFusion::Configurable | |
| virtual void | configure (const Properties *p) |
| Configure this object instance by de-serializing the given Properties. | |
| virtual void | configuration (Properties *p) const |
| Serialize the current object configuration into the given Properties object. | |
| virtual void | configureDefaults () |
| Retrieve the properties of this object, replaces values with their defaults and sets it again. | |
| void | registerParameter (ParameterBase *param) |
| Register the given Parameter or SubProperty, so that it will be configured during configure()/configuration(). | |
| void | unregisterParameter (const ParameterBase *param) |
| Remove the given Parameter or SubProperty from the list of registered parameters. | |
| Configurable (const Configurable &rhs) | |
| Configurable (Configurable &&rhs) noexcept | |
| Configurable & | operator= (const Configurable &) |
| Configurable & | operator= (Configurable &&) noexcept |
Parameters | |
| Parameter< vec2 > | p_scaleRange = {"ScaleRange", vec2(1.0, 5.0), this} |
| Range of scales the vesselness filter is computed for (each scale refers to the FWHM of a Gaussian kernel). | |
| Parameter< int > | p_numScales = {"NumScales", 5, this} |
| Number of scales the vesselness filter is computed for. | |
| Parameter< float > | p_alpha = {"Alpha", 1.f} |
| Alpha parameter (sheetness). | |
| Parameter< float > | p_beta = {"Beta", 1.f} |
| Beta parameter (blobbiness). | |
| Parameter< float > | p_gamma = {"Gamma", 1.f} |
| Gamma parameter (second order structuredness). | |
| Parameter< bool > | p_brightVessels = {"BrightVessels", false} |
| Whether to find bright or dark vessels. | |
Algorithm Interface | |
| void | compute () override |
| Executes this algorithm on the currently set input data. | |
| OwningDataList | takeOutput () override |
| Writes the results computed in compute() to the provided DataList. | |
| static bool | createCompatible (const DataList &data, Algorithm **a) |
Additional Inherited Members | |
| Public Types inherited from ImFusion::Algorithm | |
| enum | Status { Unknown = -1 , Success = 0 , Error = 1 , InvalidInput , IncompleteInput , OutOfMemoryHost , OutOfMemoryGPU , UnsupportedGPU , UnknownAction , AbortedByUser , User = 1000 } |
| Status codes. More... | |
| Static Public Member Functions inherited from ImFusion::Algorithm | |
| static bool | createCompatible (const DataList &data, Algorithm **a=nullptr) |
| Factory function to check algorithm compatibility with input data and optionally instantiate it. | |
| Public Attributes inherited from ImFusion::Algorithm | |
| Signal | signalOutputChanged |
| Signal should be emitted by Algorithms when their output/result has changed. | |
| Signal | signalParametersChanged |
| Signal should be emitted by Algorithms when their parameter configuration has changed. | |
| Public Attributes inherited from ImFusion::Configurable | |
| Signal | signalParametersChanged |
| Emitted whenever one of the registered Parameters' or SubPropertys' signalValueChanged signal was emitted. | |
| Protected Member Functions inherited from ImFusion::Algorithm | |
| void | loadDefaults () |
| void | registerAction (const std::string &id, const std::string &guiName, const std::function< Algorithm::Status(void)> &action) |
| Register an action to be run via runAction. | |
| template<typename D> | |
| void | registerAction (const std::string &id, const std::string &guiName, Algorithm::Status(D::*action)(void)) |
| Template version of runAction that can be used with a pointer to a member function. | |
| void | registerAction (const Action &action) |
| Register an action. | |
| Protected Attributes inherited from ImFusion::Algorithm | |
| std::string | m_name |
| Algorithm name. | |
| Progress * | m_progress = nullptr |
| Non-owing pointer to a progress interface. May be a nullptr. | |
| FactoryInfo | m_factoryInfo = {} |
| Record describing how this algorithm was instantiated by the AlgorithmFactory. | |
| int | m_status = Status::Unknown |
| Algorithm status after last call to compute(). | |
| std::vector< Action > | m_actions |
| Map of key given by the id of the action, of the available actions of this algorithm. | |
| Protected Attributes inherited from ImFusion::Configurable | |
| std::vector< Param > | m_params |
| List of all registered Parameter and SubProperty instances. | |
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static |
If data is compatible with algorithm return true. If a is not zero, create algorithm with input data.
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overridevirtual |
Executes this algorithm on the currently set input data.
Implements ImFusion::Algorithm.
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overridevirtual |
Writes the results computed in compute() to the provided DataList.
Reimplemented from ImFusion::Algorithm.