ImFusion Suite

Basics

  • Introduction
    • Loading Data
    • Views / Visualization
    • Annotations
    • Running Algorithms on Data
  • Data Widget
    • Basic Interaction
    • Dataset Attributes
    • Dataset Linking
    • Options
  • Views
    • Interaction
    • Windowing
    • Blending
    • Interaction list
  • Selection Widget
    • Concept
    • Target Datasets
    • Controls
      • Selection
      • Playback
  • Annotations
    • Creation and Editing Annotations
    • Essential properties
    • Global annotation vs. annotation attached to a data
    • Curved View Annotations
    • Data Annotations
  • Workspaces
    • Saving Workspaces
    • Loading Workspaces
    • Editing Workspace Files
      • Nesting of Workspace Files
    • Placeholders in Workspace files
      • Defining Placeholders
      • Running Workspace Batches
  • Global Settings
    • General settings
    • Visualization settings
    • DataWidget settings
    • Overlay settings
    • Interaction mapper
    • License information
    • Import/Export settings
    • Plugin settings
  • Tutorial Videos
    • Loading and Visualizing Medical Image Data
    • Running Algorithms
    • Annotating Data
    • Interactive Segmentation
    • Multi-Modal Image Registration
    • Working with Meshes
    • Working with Point Clouds
    • Aligning Point Clouds and Meshes
    • Working with Videos and Streams
    • Exporting Data
  • Commandline Arguments
    • ImFusionConsole Executable
    • ImFusionSuite Executable

Modules

  • Base
    • Point cloud
      • Annotation
      • Working with Point Clouds
        • Transformation
        • Processing
        • Rendering
    • Algorithms
      • Apply Mask
        • Input
        • Output
        • Description
      • Apply Deformation
        • Input
        • Output
        • Description
      • Apply Transformation
        • Input
        • Output
        • Description
      • Attach Displacement Field
        • Input
        • Output
        • Description
      • Attach Mask
        • Input
        • Output
        • Description
      • Basic Processing
        • Input
        • Output
        • Description
      • Combine Images
        • Input
        • Output
        • Description
      • Combine Point Clouds
        • Input
        • Output
        • Description
      • Combine Split Volumes
        • Input
        • Output
        • Description
      • Filter
        • Input
        • Output
        • Description
      • Compare Images
        • Input
        • Output
        • Description
      • Connectivity Analysis
        • Input
        • Output
        • Description
      • Convert To Label Map
        • Input
        • Output
        • Description
      • Convert to Volume
        • Input
        • Output
        • Description
      • Distance Transformation
        • Input
        • Output
        • Description
      • Duplicate Data
        • Input
        • Output
        • Description
      • Edit Anatomy
        • Input
        • Output
        • Description
      • Edit Deformations
        • Input
        • Output
        • Description
        • See also
      • Edit Mask
        • Input
        • Output
        • Description
      • Edit Transformation
        • Input
        • Output
        • Description
      • Extract Point Cloud
        • Input
        • Output
        • Description
      • Extract Selection
        • Input
        • Output
        • Description
      • Image Inpainting
        • Input
        • Output
        • Description
      • Image Resampling
        • Input
        • Output
        • Description
      • Image Statistics
        • Input
        • Output
        • Description
      • Labels Operations
        • Input
        • Output
        • Description
      • Link Mouse Pointer
        • Input
        • Output
        • Description
      • Link Pose
        • Input
        • Output
        • Description
      • Link Pose Deformable
        • Input
        • Output
        • Description
      • Match Windowing
        • Input
        • Output
        • Description
      • Merges Channels
        • Input
        • Output
        • Description
      • Morphological Operations
        • Input
        • Output
        • Description
        • Notes
      • Reduce to Selection
        • Input
        • Output
        • Description
      • Replace Values
        • Input
        • Output
        • Description
      • Set Modality
        • Input
        • Output
        • Description
      • Set Property
        • Input
        • Output
        • Description
      • Split Channels
        • Input
        • Output
        • Description
      • Split Images
        • Input
        • Output
        • Description
      • Superpixels Filter
        • Input
        • Output
        • Description
      • Superpixels Segmentation
        • Input
        • Output
        • Description
      • Tracking Properties
        • Input
        • Output
        • Description
      • Volume Freehand Cropping
        • Input
        • Output
        • Description
  • IO
    • Algorithms
      • 2D Image Set
        • Input
        • Output
        • Description
      • 2D Image
        • Description
      • ImFusionFile
        • Description
      • Mesh File
        • Input
        • Output
        • Description
      • MetaImage
        • Description
      • Point Cloud
        • Input
        • Output
        • Description
      • Raw Image
        • Description
      • Unpack Video
        • Input
        • Output
        • Description
  • Mesh
    • Mesh
      • Annotation
      • Context menu
      • Mesh Display Options
      • Mesh Data Controller
    • Algorithms
      • Poisson Reconstruction
        • Input
        • Output
        • Description
      • Crop Mesh or Point Cloud
        • Input
        • Output
        • Description
      • Mesh Collision Detection
        • Input
        • Output
        • Description
      • Mesh Measurements
        • Input
        • Output
        • Description
      • Texture Mapping
        • Input
        • Output
        • Description
      • Extract Mesh Texture
        • Input
        • Output
        • Description
      • Set Image Texture
        • Input
        • Output
        • Description
      • Combine Meshes
        • Input
        • Output
        • Description
      • Create Mesh Primitive
        • Input
        • Output
        • Description
      • Interactive Mesh and Point Cloud Editing
        • Input
        • Output
        • Description
      • Mesh Boolean Operations
        • Input
        • Output
        • Description
      • Mesh Processing
        • Input
        • Output
        • Description
      • Visualize Mesh or Point Cloud Distances
        • Input
        • Output
        • Description
      • Mesh Mask
        • Input
        • Output
        • Description
  • Python
    • Configuration
    • Integrated Python interpreter
    • Running Python scripts
    • Generating Python code
  • DICOM
    • DICOM settings
    • Algorithms
      • DICOM Editor
        • Description
      • Scan for DICOM Files
        • Input
        • Output
        • Description
      • Show Dicom Tags
        • Input
        • Output
        • Description
    • Importing DICOM files
    • Importing from PACS
  • Stream
    • Algorithms
      • Forward to OutStream
        • Input
        • Output
        • Description
      • Combined Tracking Streams
        • Input
        • Output
        • Description
      • OpenIGTLink
        • Input
        • Output
        • Description
      • Record Stream
        • Input
        • Output
        • Description
      • Tracking Stream Visualization
        • Input
        • Output
        • Description
      • Video Camera Stream
        • Input
        • Output
        • Description
      • Video File Stream
        • Input
        • Output
        • Description
    • Imaging Plugins
    • Tracking Plugins
  • Navigation
    • Tracking Plugins
  • Machine Learning
    • Main Algorithms
      • Run Model
        • Input
        • Output
        • Description
      • Operations Sequence
        • Input
        • Output
        • Description
      • Landmark Prediction Algorithm
        • Input
        • Output
        • Description
      • Create Pixelwise Stream
        • Input
        • Output
        • Description
    • Machine Learning Model
      • Inference YAML Config
    • Engines
    • Changelog of the Inference YAML Configuration
      • Version 8
        • Example 1
        • Example 2
      • Version 7
      • Version 6
      • Version 5
      • Version 4
      • Version 3
  • Registration
    • Algorithms
      • Analyze Motion
        • Input
        • Output
        • Description
      • Fit Bounding Box
        • Input
        • Output
        • Description
      • Image Registration
        • Input
        • Output
        • Description
      • Linear Grid Image Registration
        • Input
        • Output
        • Description
      • Point Correspondences
        • Input
        • Output
        • Description
      • Registration Results
        • Input
        • Output
        • Description
      • Reset Linked Pose
        • Input
        • Output
        • Description
      • Surface Registration
        • Input
        • Output
        • Description
      • Visualize Deformation
        • Input
        • Output
        • Description
      • Visualize Displacement
        • Input
        • Output
        • Description
      • Volume Compounding
        • Input
        • Output
        • Description
  • Segmentation
    • Algorithms
      • Extract Mesh
        • Input
        • Output
        • Description
      • Fiducial Extraction
        • Input
        • Output
        • Description
      • Interactive Segmentation
        • Input
        • Description
      • Interactive Watershed Segmentation
        • Description
      • Labeling
        • Input
        • Description
      • Statistics
        • Input
        • Output
        • Description
      • Structures View
        • Input
        • Output
        • Description
  • Ultrasound
    • Ultrasound Sweep
      • Structure
      • Image Pose Look-up
      • Visualization
    • Ultrasound Frame Geometry
    • Algorithms
      • Sweep Compounding
        • Input
        • Output
        • Description
      • Sweep Properties
        • Input
        • Output
        • Description
      • Sweep Tracking Properties
        • Input
        • Output
        • Description
      • Ultrasound Calibration
        • Input
        • Output
        • Description
        • References
      • Frame Geometry Properties
        • Input
        • Output
        • Description
        • Features
      • Ultrasound Registration
        • Input
        • Output
        • Description
      • Record Ultrasound Sweeps
        • Input
        • Output
        • Description
      • Ultrasound Simulation
        • Input
        • Output
        • Description
      • Hybrid Ultrasound Simulation
        • Input
        • Output
        • Description
      • User Defined Sweep for Simulation
        • Exemplary User Defined Sweeps
    • Tutorials
      • Ultrasound Registration
        • Data loading
        • Data exploration
        • Registration
        • Result analysis
        • Saving and export
  • Live Ultrasound
    • Algorithms
      • Record Ultrasound Sweeps
        • Input
        • Output
        • Description
      • Sweep Plaback
        • Input
        • Output
        • Description
    • Frame Grabbing of Ultrasound Images
      • Preparing the Ultrasound Machine
      • Connecting a Framegrabber Device
      • Processing the Video Stream into an Ultrasound Stream
      • Configuring a Frame Geometry
      • Configuring other Processing Parameters
      • Configuring Presets for the Frame Geometry
      • Creating a New Preset
      • Using an Existing Preset
      • Deleting an Existing Preset
      • Modifying an Existing Preset
      • Saving the Configured Presets
  • CT
    • Algorithms
      • Cone Beam Simulation
        • Input
        • Output
        • Description
      • Hounsfield Calibration
        • Input
        • Output
        • Description
      • CT Reconstruction
        • Additional parameters
      • XRay 2D-3D Registration
        • Input
        • Output
        • Description
        • Initialization
        • Edit X-Ray Geometry
        • History
        • Parameters:
      • Post Processing
        • Input
        • Parameters
  • Vision
    • Camera Calibration Data Component
      • Contents of Camera Calibration Data Component
      • Creating a Camera Calibration Data Component
    • Marker Board Configuration Widget
      • Single Markers
        • 1. ArUco Marker
        • 2. AprilTag Marker
        • 3. STag Marker
      • Marker Boards
        • 1. ArUco Board
        • 2. ChArUco board
        • 3. Chessboard
        • 4. Circle Board
        • 5. April Tag Board
    • Camera Calibration Settings
    • Algorithms
      • Camera Calibration
        • Input
        • Output
        • Description
      • Camera Registration
        • Input
        • Output
        • Description
      • Edit Camera Calibration
        • Input
        • Output
        • Description
      • Feature Detection
        • Input
        • Output
        • Description
      • Filter Point Cloud
        • Input
        • Output
        • Description
      • Hand-Eye Calibration
        • Input
        • Output
        • Description
      • Image Undistortion
        • Input
        • Output
        • Description
      • Interlaced To Stereo
        • Input
        • Output
        • Description
      • Live Hand-Eye Calibration
        • Input
        • Output
        • Description
      • Live Hand-Eye Evaluation
        • Input
        • Output
        • Description
      • Live Stereo Calibration
        • Input
        • Output
        • Description
      • Live Tracking
        • Input
        • Output
        • Description
      • Marker Detection
        • Input
        • Output
        • Description
      • Marker Generation
        • Input
        • Output
        • Description
      • Mesh Alignment (ICP)
        • Input
        • Output
        • Description
      • Monocular Depth Estimation
        • Input
        • Output
        • Description
      • Optical Flow
        • Input
        • Output
        • Description
      • Point Cloud Overlap
        • Input
        • Output
        • Description
      • Pose Graph Optimization
        • Input
        • Output
        • Description
      • Stereo Reconstruction
        • Input
        • Output
        • Description
      • Stereo Rectification
        • Input
        • Output
        • Description

Other links

  • ImFusion Website
  • Support Forum
ImFusion Suite
  • Vision
  • View page source

Vision

  • Camera Calibration Data Component
    • Contents of Camera Calibration Data Component
    • Creating a Camera Calibration Data Component
  • Marker Board Configuration Widget
    • Single Markers
    • Marker Boards
  • Camera Calibration Settings
  • Algorithms
    • Camera Calibration
    • Camera Registration
    • Edit Camera Calibration
    • Feature Detection
    • Filter Point Cloud
    • Hand-Eye Calibration
    • Image Undistortion
    • Interlaced To Stereo
    • Live Hand-Eye Calibration
    • Live Hand-Eye Evaluation
    • Live Stereo Calibration
    • Live Tracking
    • Marker Detection
    • Marker Generation
    • Mesh Alignment (ICP)
    • Monocular Depth Estimation
    • Optical Flow
    • Point Cloud Overlap
    • Pose Graph Optimization
    • Stereo Reconstruction
    • Stereo Rectification

The Vision module offers different computer vision algorithms such as camera calibration, marker tracking etc.

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