Basics

Introduction
Data Widget
Views
Selection Widget
Annotations
Workspaces
Global Settings
Tutorial Videos
Commandline Arguments
- ImFusionConsole Executable
- ImFusionSuite Executable

Modules

Base
- Point cloud
  - Annotation
  - Working with Point Clouds
- Algorithms
  - Apply Mask
    - Input
    - Output
    - Description
  - Apply Deformation
    - Input
    - Output
    - Description
  - Apply Transformation
    - Input
    - Output
    - Description
  - Attach Displacement Field
    - Input
    - Output
    - Description
  - Attach Mask
    - Input
    - Output
    - Description
  - Basic Processing
    - Input
    - Output
    - Description
  - Combine Images
    - Input
    - Output
    - Description
  - Combine Point Clouds
    - Input
    - Output
    - Description
  - Combine Split Volumes
    - Input
    - Output
    - Description
  - Filter
    - Input
    - Output
    - Description
  - Compare Images
    - Input
    - Output
    - Description
  - Connectivity Analysis
    - Input
    - Output
    - Description
  - Convert To Label Map
    - Input
    - Output
    - Description
  - Convert to Volume
    - Input
    - Output
    - Description
  - Distance Transformation
    - Input
    - Output
    - Description
  - Duplicate Data
    - Input
    - Output
    - Description
  - Edit Anatomy
    - Input
    - Output
    - Description
  - Edit Deformations
    - Input
    - Output
    - Description
    - See also
  - Edit Mask
    - Input
    - Output
    - Description
  - Edit Transformation
    - Input
    - Output
    - Description
  - Extract Point Cloud
    - Input
    - Output
    - Description
  - Extract Selection
    - Input
    - Output
    - Description
  - Image Inpainting
    - Input
    - Output
    - Description
  - Image Resampling
    - Input
    - Output
    - Description
  - Image Statistics
    - Input
    - Output
    - Description
  - Labels Operations
    - Input
    - Output
    - Description
  - Link Mouse Pointer
    - Input
    - Output
    - Description
  - Link Pose
    - Input
    - Output
    - Description
  - Link Pose Deformable
    - Input
    - Output
    - Description
  - Match Windowing
    - Input
    - Output
    - Description
  - Merges Channels
    - Input
    - Output
    - Description
  - Morphological Operations
    - Input
    - Output
    - Description
    - Notes
  - Reduce to Selection
    - Input
    - Output
    - Description
  - Replace Values
    - Input
    - Output
    - Description
  - Set Modality
    - Input
    - Output
    - Description
  - Set Property
    - Input
    - Output
    - Description
  - Split Channels
    - Input
    - Output
    - Description
  - Split Images
    - Input
    - Output
    - Description
  - Superpixels Filter
    - Input
    - Output
    - Description
  - Superpixels Segmentation
    - Input
    - Output
    - Description
  - Tracking Properties
    - Input
    - Output
    - Description
  - Volume Freehand Cropping
    - Input
    - Output
    - Description
IO
- Algorithms
  - 2D Image Set
    - Input
    - Output
    - Description
  - 2D Image
    - Description
  - ImFusionFile
    - Description
  - Mesh File
    - Input
    - Output
    - Description
  - MetaImage
    - Description
  - Point Cloud
    - Input
    - Output
    - Description
  - Raw Image
    - Description
  - Unpack Video
    - Input
    - Output
    - Description
Mesh
- Mesh
- Algorithms
  - Poisson Reconstruction
    - Input
    - Output
    - Description
  - Crop Mesh or Point Cloud
    - Input
    - Output
    - Description
  - Mesh Collision Detection
    - Input
    - Output
    - Description
  - Mesh Measurements
    - Input
    - Output
    - Description
  - Texture Mapping
    - Input
    - Output
    - Description
  - Extract Mesh Texture
    - Input
    - Output
    - Description
  - Set Image Texture
    - Input
    - Output
    - Description
  - Combine Meshes
    - Input
    - Output
    - Description
  - Create Mesh Primitive
    - Input
    - Output
    - Description
  - Interactive Mesh and Point Cloud Editing
    - Input
    - Output
    - Description
  - Mesh Boolean Operations
    - Input
    - Output
    - Description
  - Mesh Processing
    - Input
    - Output
    - Description
  - Visualize Mesh or Point Cloud Distances
    - Input
    - Output
    - Description
  - Mesh Mask
    - Input
    - Output
    - Description
Python
DICOM
Stream
- Algorithms
  - Forward to OutStream
    - Input
    - Output
    - Description
  - Combined Tracking Streams
    - Input
    - Output
    - Description
  - OpenIGTLink
    - Input
    - Output
    - Description
  - Record Stream
    - Input
    - Output
    - Description
  - Tracking Stream Visualization
    - Input
    - Output
    - Description
  - Video Camera Stream
    - Input
    - Output
    - Description
  - Video File Stream
    - Input
    - Output
    - Description
- Imaging Plugins
- Tracking Plugins
Navigation
- Tracking Plugins
Machine Learning
Registration
- Algorithms
  - Analyze Motion
    - Input
    - Output
    - Description
  - Fit Bounding Box
    - Input
    - Output
    - Description
  - Image Registration
    - Input
    - Output
    - Description
  - Linear Grid Image Registration
    - Input
    - Output
    - Description
  - Point Correspondences
    - Input
    - Output
    - Description
  - Registration Results
    - Input
    - Output
    - Description
  - Reset Linked Pose
    - Input
    - Output
    - Description
  - Surface Registration
    - Input
    - Output
    - Description
  - Visualize Deformation
    - Input
    - Output
    - Description
  - Visualize Displacement
    - Input
    - Output
    - Description
  - Volume Compounding
    - Input
    - Output
    - Description
Segmentation
- Algorithms
  - Extract Mesh
    - Input
    - Output
    - Description
  - Fiducial Extraction
    - Input
    - Output
    - Description
  - Interactive Segmentation
    - Input
    - Description
  - Interactive Watershed Segmentation
    - Description
  - Labeling
    - Input
    - Description
  - Statistics
    - Input
    - Output
    - Description
  - Structures View
    - Input
    - Output
    - Description
Ultrasound
Live Ultrasound
- Algorithms
  - Record Ultrasound Sweeps
    - Input
    - Output
    - Description
  - Sweep Plaback
    - Input
    - Output
    - Description
- Frame Grabbing of Ultrasound Images
CT
- Algorithms
Vision
Anatomy
Spine
- Data Structure
  - SpineData
- Algorithms
  - Algorithms
Atracsys Tracking Plugin
NDI Tracking Plugin
Endoscopy
- Algorithms
  - Endoscopic Tool Segmentation
    - Input
    - Output
    - Description
RGB-D

Other links

ImFusion Website
Support Forum

ImFusion Suite

Endoscopy
View page source

Endoscopy

Algorithms
- Endoscopic Tool Segmentation

The Endoscopy module offers various tools and algorithms for endoscopic applications.

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