ImFusion Suite

Basics

  • Introduction
    • Loading Data
    • Views / Visualization
    • Annotations
    • Running Algorithms on Data
  • Data Widget
    • Basic Interaction
    • Dataset Attributes
    • Dataset Linking
    • Options
  • Views
    • Interaction
    • Windowing
    • Blending
    • Interaction list
  • Selection Widget
    • Concept
    • Target Datasets
    • Controls
      • Selection
      • Playback
  • Annotations
    • Creation and Editing Annotations
    • Essential properties
    • Global annotation vs. annotation attached to a data
    • Curved View Annotations
    • Data Annotations
  • Workspaces
    • Saving Workspaces
    • Loading Workspaces
    • Editing Workspace Files
      • Nesting of Workspace Files
    • Placeholders in Workspace files
      • Defining Placeholders
      • Running Workspace Batches
  • Global Settings
    • General settings
    • Visualization settings
    • DataWidget settings
    • Overlay settings
    • Interaction mapper
    • License information
    • Import/Export settings
    • Plugin settings
  • Tutorial Videos
    • Loading and Visualizing Medical Image Data
    • Running Algorithms
    • Annotating Data
    • Interactive Segmentation
    • Multi-Modal Image Registration
    • Working with Meshes
    • Working with Point Clouds
    • Aligning Point Clouds and Meshes
    • Working with Videos and Streams
    • Exporting Data
  • Commandline Arguments
    • ImFusionConsole Executable
    • ImFusionSuite Executable

Modules

  • Base
    • Point cloud
      • Annotation
      • Working with Point Clouds
        • Transformation
        • Processing
        • Rendering
    • Algorithms
      • Apply Mask
        • Input
        • Output
        • Description
      • Apply Deformation
        • Input
        • Output
        • Description
      • Apply Transformation
        • Input
        • Output
        • Description
      • Attach Displacement Field
        • Input
        • Output
        • Description
      • Attach Mask
        • Input
        • Output
        • Description
      • Basic Processing
        • Input
        • Output
        • Description
      • Combine Images
        • Input
        • Output
        • Description
      • Combine Point Clouds
        • Input
        • Output
        • Description
      • Combine Split Volumes
        • Input
        • Output
        • Description
      • Filter
        • Input
        • Output
        • Description
      • Compare Images
        • Input
        • Output
        • Description
      • Connectivity Analysis
        • Input
        • Output
        • Description
      • Convert To Label Map
        • Input
        • Output
        • Description
      • Convert to Volume
        • Input
        • Output
        • Description
      • Distance Transformation
        • Input
        • Output
        • Description
      • Duplicate Data
        • Input
        • Output
        • Description
      • Edit Anatomy
        • Input
        • Output
        • Description
      • Edit Deformations
        • Input
        • Output
        • Description
        • See also
      • Edit Mask
        • Input
        • Output
        • Description
      • Edit Transformation
        • Input
        • Output
        • Description
      • Extract Point Cloud
        • Input
        • Output
        • Description
      • Extract Selection
        • Input
        • Output
        • Description
      • Image Inpainting
        • Input
        • Output
        • Description
      • Image Resampling
        • Input
        • Output
        • Description
      • Image Statistics
        • Input
        • Output
        • Description
      • Labels Operations
        • Input
        • Output
        • Description
      • Link Mouse Pointer
        • Input
        • Output
        • Description
      • Link Pose
        • Input
        • Output
        • Description
      • Link Pose Deformable
        • Input
        • Output
        • Description
      • Match Windowing
        • Input
        • Output
        • Description
      • Merges Channels
        • Input
        • Output
        • Description
      • Morphological Operations
        • Input
        • Output
        • Description
        • Notes
      • Reduce to Selection
        • Input
        • Output
        • Description
      • Replace Values
        • Input
        • Output
        • Description
      • Set Modality
        • Input
        • Output
        • Description
      • Set Property
        • Input
        • Output
        • Description
      • Split Channels
        • Input
        • Output
        • Description
      • Split Images
        • Input
        • Output
        • Description
      • Superpixels Filter
        • Input
        • Output
        • Description
      • Superpixels Segmentation
        • Input
        • Output
        • Description
      • Tracking Properties
        • Input
        • Output
        • Description
      • Volume Freehand Cropping
        • Input
        • Output
        • Description
  • IO
    • Algorithms
      • 2D Image Set
        • Input
        • Output
        • Description
      • 2D Image
        • Description
      • ImFusionFile
        • Description
      • Mesh File
        • Input
        • Output
        • Description
      • MetaImage
        • Description
      • Point Cloud
        • Input
        • Output
        • Description
      • Raw Image
        • Description
      • Unpack Video
        • Input
        • Output
        • Description
  • Mesh
    • Mesh
      • Annotation
      • Context menu
      • Mesh Display Options
      • Mesh Data Controller
    • Algorithms
      • Poisson Reconstruction
        • Input
        • Output
        • Description
      • Crop Mesh or Point Cloud
        • Input
        • Output
        • Description
      • Mesh Collision Detection
        • Input
        • Output
        • Description
      • Mesh Measurements
        • Input
        • Output
        • Description
      • Texture Mapping
        • Input
        • Output
        • Description
      • Extract Mesh Texture
        • Input
        • Output
        • Description
      • Set Image Texture
        • Input
        • Output
        • Description
      • Combine Meshes
        • Input
        • Output
        • Description
      • Create Mesh Primitive
        • Input
        • Output
        • Description
      • Interactive Mesh and Point Cloud Editing
        • Input
        • Output
        • Description
      • Mesh Boolean Operations
        • Input
        • Output
        • Description
      • Mesh Processing
        • Input
        • Output
        • Description
      • Visualize Mesh or Point Cloud Distances
        • Input
        • Output
        • Description
      • Mesh Mask
        • Input
        • Output
        • Description
  • Python
    • Configuration
    • Integrated Python interpreter
    • Running Python scripts
    • Generating Python code
  • DICOM
    • DICOM settings
    • Algorithms
      • DICOM Editor
        • Description
      • Scan for DICOM Files
        • Input
        • Output
        • Description
      • Show Dicom Tags
        • Input
        • Output
        • Description
    • Importing DICOM files
    • Importing from PACS
  • Stream
    • Algorithms
      • Forward to OutStream
        • Input
        • Output
        • Description
      • Combined Tracking Streams
        • Input
        • Output
        • Description
      • OpenIGTLink
        • Input
        • Output
        • Description
      • Record Stream
        • Input
        • Output
        • Description
      • Tracking Stream Visualization
        • Input
        • Output
        • Description
      • Video Camera Stream
        • Input
        • Output
        • Description
      • Video File Stream
        • Input
        • Output
        • Description
    • Imaging Plugins
    • Tracking Plugins
  • Machine Learning
    • Main Algorithms
      • Run Model
        • Input
        • Output
        • Description
      • Operations Sequence
        • Input
        • Output
        • Description
      • Landmark Prediction Algorithm
        • Input
        • Output
        • Description
      • Create Pixelwise Stream
        • Input
        • Output
        • Description
    • Machine Learning Model
      • Inference YAML Config
    • Engines
    • Changelog of the Inference YAML Configuration
      • Version 8
        • Example 1
        • Example 2
      • Version 7
      • Version 6
      • Version 5
      • Version 4
      • Version 3
  • Registration
    • Algorithms
      • Analyze Motion
        • Input
        • Output
        • Description
      • Fit Bounding Box
        • Input
        • Output
        • Description
      • Image Registration
        • Input
        • Output
        • Description
      • Linear Grid Image Registration
        • Input
        • Output
        • Description
      • Point Correspondences
        • Input
        • Output
        • Description
      • Registration Results
        • Input
        • Output
        • Description
      • Reset Linked Pose
        • Input
        • Output
        • Description
      • Surface Registration
        • Input
        • Output
        • Description
      • Visualize Deformation
        • Input
        • Output
        • Description
      • Visualize Displacement
        • Input
        • Output
        • Description
      • Volume Compounding
        • Input
        • Output
        • Description
  • Segmentation
    • Algorithms
      • Extract Mesh
        • Input
        • Output
        • Description
      • Fiducial Extraction
        • Input
        • Output
        • Description
      • Interactive Segmentation
        • Input
        • Description
      • Interactive Watershed Segmentation
        • Description
      • Labeling
        • Input
        • Description
      • Statistics
        • Input
        • Output
        • Description
      • Structures View
        • Input
        • Output
        • Description
  • Ultrasound
    • Ultrasound Sweep
      • Structure
      • Image Pose Look-up
      • Visualization
    • Ultrasound Frame Geometry
    • Algorithms
      • Sweep Compounding
        • Input
        • Output
        • Description
      • Sweep Properties
        • Input
        • Output
        • Description
      • Sweep Tracking Properties
        • Input
        • Output
        • Description
      • Ultrasound Calibration
        • Input
        • Output
        • Description
        • References
      • Frame Geometry Properties
        • Input
        • Output
        • Description
        • Features
      • Ultrasound Registration
        • Input
        • Output
        • Description
      • Record Ultrasound Sweeps
        • Input
        • Output
        • Description
      • Ultrasound Simulation
        • Input
        • Output
        • Description
      • Hybrid Ultrasound Simulation
        • Input
        • Output
        • Description
      • User Defined Sweep for Simulation
        • Exemplary User Defined Sweeps
    • Tutorials
      • Ultrasound Registration
        • Data loading
        • Data exploration
        • Registration
        • Result analysis
        • Saving and export
  • Live Ultrasound
    • Algorithms
      • Record Ultrasound Sweeps
        • Input
        • Output
        • Description
      • Sweep Plaback
        • Input
        • Output
        • Description
    • Frame Grabbing of Ultrasound Images
      • Preparing the Ultrasound Machine
      • Connecting a Framegrabber Device
      • Processing the Video Stream into an Ultrasound Stream
      • Configuring a Frame Geometry
      • Configuring other Processing Parameters
      • Configuring Presets for the Frame Geometry
      • Creating a New Preset
      • Using an Existing Preset
      • Deleting an Existing Preset
      • Modifying an Existing Preset
      • Saving the Configured Presets
  • CT
    • Algorithms
      • Cone Beam Simulation
        • Input
        • Output
        • Description
      • Hounsfield Calibration
        • Input
        • Output
        • Description
      • CT Reconstruction
        • Additional parameters
      • XRay 2D-3D Registration
        • Input
        • Output
        • Description
        • Initialization
        • Edit X-Ray Geometry
        • History
        • Parameters:
      • Post Processing
        • Input
        • Parameters
  • Vision
    • Camera Calibration Data Component
      • Contents of Camera Calibration Data Component
      • Creating a Camera Calibration Data Component
    • Marker Board Configuration Widget
      • Single Markers
        • 1. ArUco Marker
        • 2. AprilTag Marker
        • 3. STag Marker
      • Marker Boards
        • 1. ArUco Board
        • 2. ChArUco board
        • 3. Chessboard
        • 4. Circle Board
        • 5. April Tag Board
    • Camera Calibration Settings
    • Algorithms
      • Camera Calibration
        • Input
        • Output
        • Description
      • Camera Registration
        • Input
        • Output
        • Description
      • Edit Camera Calibration
        • Input
        • Output
        • Description
      • Feature Detection
        • Input
        • Output
        • Description
      • Filter Point Cloud
        • Input
        • Output
        • Description
      • Hand-Eye Calibration
        • Input
        • Output
        • Description
      • Image Undistortion
        • Input
        • Output
        • Description
      • Interlaced To Stereo
        • Input
        • Output
        • Description
      • Live Hand-Eye Calibration
        • Input
        • Output
        • Description
      • Live Hand-Eye Evaluation
        • Input
        • Output
        • Description
      • Live Stereo Calibration
        • Input
        • Output
        • Description
      • Live Tracking
        • Input
        • Output
        • Description
      • Marker Detection
        • Input
        • Output
        • Description
      • Marker Generation
        • Input
        • Output
        • Description
      • Mesh Alignment (ICP)
        • Input
        • Output
        • Description
      • Monocular Depth Estimation
        • Input
        • Output
        • Description
      • Optical Flow
        • Input
        • Output
        • Description
      • Point Cloud Overlap
        • Input
        • Output
        • Description
      • Pose Graph Optimization
        • Input
        • Output
        • Description
      • Stereo Reconstruction
        • Input
        • Output
        • Description
      • Stereo Rectification
        • Input
        • Output
        • Description
  • Anatomy
    • Anatomical Structure Collection (ASC)
      • Summary
      • Contents
      • Generic ASC
      • ASC Sets
      • Anatomical Structures
      • Style Sheets
      • Save and load
      • See also
    • Anatomical Registration
      • Overview
      • Outcomes
      • Modes and pipeline
      • Registration data and propagation
      • See also
    • Algorithms
      • ASC Registration
        • Summary
        • See also
        • Compatible data
        • Input
        • Output
        • Workflow
      • ASC 2D–3D Registration
        • Summary
        • Compatible data
        • Input
        • Output
        • Workflow
      • ASC Projection
        • Summary
        • Compatible data
        • Input
        • Output
        • Workflow
      • ASC I/O
        • Summary
        • Input
        • Output
      • ASC Viewer
        • Summary
        • Compatible data
        • Input
        • Workflow
  • Atracsys Tracking Plugin
    • Overview
    • Key Functionalities
    • Tool definition (INI-files)
    • Usage
  • NDI Tracking Plugin
    • Overview
    • Key Functionalities
    • Tool definition (ROM-files)
    • Usage
  • RGB-D
    • RGB-D Stream
      • Settings and properties
      • Creating an RGBD Stream
    • RGB-D Sequence
    • RGB-D Data Component
      • Contents of RGB-D Data Component
      • Creating an RGB-D Data Component
    • Algorithms
      • Convert to Depth Map
        • Input
        • Output
        • Description
      • Convert to Point Cloud
        • Input
        • Output
        • Description
      • Convert to RGB-D Sequence
        • Input
        • Output
        • Description
      • Depth Change Estimation
        • Input
        • Output
        • Export
        • Description
      • Extract Frames
        • Input
        • Output
        • Description
      • Frame Capture
        • Input
        • Output
        • Description
      • Record Sequence
        • Input
        • Output
        • Description
      • Kinect Azure Stream Playback
        • Input
        • Output
        • Description
      • Kinect Azure Stream Recorder
        • Input
        • Output
        • Description
      • Multi Sensor Point Cloud Capture
        • Input
        • Output
        • Description
      • Point Cloud Plane Fitting
        • Input
        • Output
        • Description
      • RGB-D Calibration
        • Input
        • Output
        • Description
      • RGB-D Reconstruction
        • Input
        • Output
        • Description
      • RGB-D Sequence IO
        • Input
        • Output
      • RGB-D Sensor Stream
        • Input
        • Output
        • Description
      • RGB-D Simulation
        • Input
        • Output
        • Description
      • Sphere Detection
        • Input
        • Output
        • Description
      • Stream Properties
        • Input
        • Output
        • Description
      • Texturing
        • Input
        • Output
        • Description
      • Convert to Mesh
        • Input
        • Output
        • Description
  • Spine
    • Data Structure
      • SpineData
        • Overview
        • Contents
        • Save and load
        • Template usage
    • Algorithms
      • Algorithms
        • SpineData from Multi-Label
        • Spine Localization and Classification
        • Deformable Spine-to-Spine Registration
        • Load Spine Template
        • Spine Poly-rigid Deformation
        • Spine Mesh Curvature
        • Poly Rigid Registration
        • Spine 2D Localization
  • Ultrasound Image Formation
    • Channel Data
      • Required Metadata
      • Optional Metadata
    • Simulated Channel Data Stream
      • Key Features
      • Typical Use Cases
      • Usage
    • Algorithms
      • Beamforming
        • Input
        • Output
        • Description
      • Channel Data Filter
        • Input
        • Output
        • Description
      • Channel Data Remapping
        • Input
        • Output
        • Description
      • Envelope Detection
        • Input
        • Output
      • IQ Demodulation
        • Input
        • Output
        • Description
      • Scan Conversion
        • Input
        • Output
        • Description
        • Algorithm Variants
    • Overview
    • Key Functionalities
    • Relation to the US Module
    • Getting Started

Other links

  • ImFusion Website
  • Support Forum
ImFusion Suite
  • Stream
  • Algorithms
  • OpenIGTLink
  • View page source

OpenIGTLink

IO algorithm for managing incoming (receiving) and outgoing (sending) connections using the OpenIGTLink protocol

Input

All OpenIGTLink connections require a connection partner (either server or client) to establish a TCP/IP connection. Outgoing connections furthermore require a stream for forwarding stream data via OpenIGTLink.

Output

For each OpenIGTLink connection, a stream element is added to the data widget.

Description

The algorithm allows to manage an arbitrary amount of OpenIGTLink connections. For creating a new connection, the following parameters need to be specified:

  • Connection Name defines the name of the stream for subsequent identification.

  • Operation Mode defines whether the connection should behave as Server or Client.

  • CRC Check flag turns on CRC integrity checks of all incoming OpenIGTLink messages.

  • Hostname can be an IP address or DNS-resolvable hostname to connect to (only for Client).

  • Port sets the TCP/IP port to be used.

  • Type defines both the connection direction and the data type expected. The connection direction can be either incoming (default) or outgoing (Output). Currently, image as well as tracking streams are supported.

A click on Create New adds the connection to the list of connections and also creates a stream instance, which is added to the data widget.

Note that no TCP/IP action is performed automatically. Instead, the context menu in the connection list has to be used. For Server connections, Start listening will open the specified port and listen to connecting clients. For Client connections, Connect will try to establish a connection with the specified host.

Incoming streams can directly be used, for instance for stream recording. Outgoing streams need to be linked to other streams in the data widget using Forward to OutStream.

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