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ImFusion C++ SDK 4.4.0
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ImFusion C++ SDK 4.4.0
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#include <CranialPlugin/include/ImFusion/Cranial/VesselSegmentationAlgorithm.h>
Algorithm for segmenting vessels in brain MR scans with contrast. More...
Algorithm for segmenting vessels in brain MR scans with contrast.
Note: This algorithm is experimental.
Public Member Functions | |
| VesselSegmentationAlgorithm (SharedImageSet &input, AnatomicalStructureCollection *asc=nullptr) | |
| Constructor. If asc is not null, segmentation results will be written to it. | |
| SharedImageSet & | input () const |
| void | setInputImage (SharedImageSet &newInput) |
| AnatomicalStructureCollection * | asc () const |
| const SharedImageSet * | vesselMap () const |
| Returns a non-owning pointer to the generated vessel map, or nullptr if the algorithm was not successful or if the output was already fetched via takeOutput(). | |
| Public Member Functions inherited from ImFusion::Algorithm | |
| Algorithm () | |
| Default constructor will registers a single "compute" action that calls compute() and returns status(). | |
| virtual void | setProgress (Progress *progress) |
| Sets a Progress interface the algorithm can use to notify observers about its computing progress. | |
| Progress * | progress () const |
| Returns the progress interface if set. | |
| virtual int | status () const |
| Indicates the status of the last call to compute(). | |
| const FactoryInfo & | factoryInfo () const |
| Returns the record describing how this Algorithm was instantiated by the AlgorithmFactory. | |
| void | setFactoryInfo (const FactoryInfo &value) |
| Sets the record describing how this Algorithm was instantiated by the AlgorithmFactory. | |
| Status | runAction (const std::string &id) |
| Run the action with name id if it exists. | |
| const std::vector< Action > & | actions () |
| Get a mapping from Action id to Action as registered in this algorithm. | |
| Public Member Functions inherited from ImFusion::Configurable | |
| virtual void | configureDefaults () |
| Retrieve the properties of this object, replaces values with their defaults and sets it again. | |
| void | registerParameter (ParameterBase *param) |
| Register the given Parameter or SubProperty, so that it will be configured during configure()/configuration(). | |
| void | unregisterParameter (const ParameterBase *param) |
| Remove the given Parameter or SubProperty from the list of registered parameters. | |
| Configurable (const Configurable &rhs) | |
| Configurable (Configurable &&rhs) noexcept | |
| Configurable & | operator= (const Configurable &) |
| Configurable & | operator= (Configurable &&) noexcept |
Public Attributes | |
| Parameter< std::string > | p_modelPath = {"modelPath", "", this} |
| Model to use for the brain segmentation. | |
| Parameter< bool > | p_useBrainMask = {"useBrainMask", true, this} |
| If enabled, performs a brain segmentation to remove detections outside the brain. | |
| Parameter< bool > | p_keepLargestComponent = {"keepLargestComponent", false, this} |
| If enabled, removes all components but the largest one. | |
| Public Attributes inherited from ImFusion::Algorithm | |
| Signal | signalOutputChanged |
| Signal should be emitted by Algorithms when their output/result has changed. | |
| Signal | signalParametersChanged |
| Signal should be emitted by Algorithms when their parameter configuration has changed. | |
| Public Attributes inherited from ImFusion::Configurable | |
| Signal | signalParametersChanged |
| Emitted whenever one of the registered Parameters' or SubPropertys' signalValueChanged signal was emitted. | |
| void | configure (const Properties *p) override |
| Configure this object instance by de-serializing the given Properties. | |
| void | configuration (Properties *p) const override |
| Serialize the current object configuration into the given Properties object. | |
| void | compute () override |
| Execute the algorithm. | |
| bool | survivesDataDeletion (const Data *) const override |
| Indicates whether the algorithm can handle (partial) deletion of the specified data, by default this checks whether the data is in the input list. | |
| OwningDataList | takeOutput () override |
| Returns (1) the label map, (2) the AnatomicalStructureCollection if it has been created by the algorithm. | |
| static bool | createCompatible (const DataList &data, Algorithm **a=0) |
| Standard methods for the Algorithm interface. | |
Additional Inherited Members | |
| Public Types inherited from ImFusion::Algorithm | |
| enum | Status { Unknown = -1 , Success = 0 , Error = 1 , InvalidInput , IncompleteInput , OutOfMemoryHost , OutOfMemoryGPU , UnsupportedGPU , UnknownAction , AbortedByUser , User = 1000 } |
| Status codes. More... | |
| Static Public Member Functions inherited from ImFusion::Algorithm | |
| static bool | createCompatible (const DataList &data, Algorithm **a=nullptr) |
| Factory function to check algorithm compatibility with input data and optionally instantiate it. | |
| Protected Member Functions inherited from ImFusion::Algorithm | |
| void | loadDefaults () |
| void | registerAction (const std::string &id, const std::string &guiName, const std::function< Algorithm::Status(void)> &action) |
| Register an action to be run via runAction. | |
| template<typename D> | |
| void | registerAction (const std::string &id, const std::string &guiName, Algorithm::Status(D::*action)(void)) |
| Template version of runAction that can be used with a pointer to a member function. | |
| void | registerAction (const Action &action) |
| Register an action. | |
| Protected Attributes inherited from ImFusion::Algorithm | |
| std::string | m_name |
| Algorithm name. | |
| Progress * | m_progress = nullptr |
| Non-owing pointer to a progress interface. May be a nullptr. | |
| FactoryInfo | m_factoryInfo = {} |
| Record describing how this algorithm was instantiated by the AlgorithmFactory. | |
| int | m_status = Status::Unknown |
| Algorithm status after last call to compute(). | |
| std::vector< Action > | m_actions |
| Map of key given by the id of the action, of the available actions of this algorithm. | |
| Protected Attributes inherited from ImFusion::Configurable | |
| std::vector< Param > | m_params |
| List of all registered Parameter and SubProperty instances. | |
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overridevirtual |
Configure this object instance by de-serializing the given Properties.
The default implementation will do so automatically for all registered Parameter and SubProperty instances.
Reimplemented from ImFusion::Configurable.
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overridevirtual |
Serialize the current object configuration into the given Properties object.
The default implementation will do so automatically for all registered Parameter and SubProperty instances.
Reimplemented from ImFusion::Configurable.
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overridevirtual |
Execute the algorithm.
Implements ImFusion::Algorithm.
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overridevirtual |
Indicates whether the algorithm can handle (partial) deletion of the specified data, by default this checks whether the data is in the input list.
Reimplemented from ImFusion::Algorithm.
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overridevirtual |
Returns (1) the label map, (2) the AnatomicalStructureCollection if it has been created by the algorithm.
Reimplemented from ImFusion::Algorithm.