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ImFusion C++ SDK 4.5.0
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ImFusion C++ SDK 4.5.0
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#include <ImFusion/Dicom/DicomIOD_SegmentationStorage.h>
Class representing Segmentation IOD. More...
Class representing Segmentation IOD.
This is basically an EnhancedMultiFrameImageIOD with some additional segmentation data added on top. Supports an additional, not standard-conform mode where label maps are directly stored as probability maps, instead of being split into individual bitfields for each label value.
Public Member Functions | |
| SegmentationStorageIOD (DcmDataset &dataset, const OFString &sopClassUID) | |
| std::vector< FrameDescriptorSet > | sortAndGroupFrames (const std::vector< FrameDescriptor > &frames) const override |
| Sorts and groups the given frames into sets of associated frames (e.g. | |
| void | setAutoCrop (bool b) |
| void | loadFrameData (const FrameDescriptor &desc, MemImage &image, int slice=-1) override |
| Loads the actual frame data into the given image. | |
| void | loadFrameProperties (const FrameDescriptor &desc, SharedImageSet &image) override |
| Loads any additional properties into the given image. | |
| Public Member Functions inherited from ImFusion::Dicom::EnhancedMultiFrameImageIOD | |
| EnhancedMultiFrameImageIOD (DcmDataset &dataset, const OFString &sopClassUID) | |
| void | checkErrors () const override |
| Checks modules for errors and adds them to the list. | |
| std::vector< FrameDescriptor > | loadFrames () override |
| Loads the descriptors of all individual frames stored in this IOD. | |
| void | save (SharedImageSet &imageSet, int sharedImageIndex, int sliceIndex) override |
| Stores the general image descriptor and metadata of imageSet in the DICOM data set. | |
| void | savePixelData (SharedImageSet &imageSet, int sharedImageIndex, int sliceIndex) override |
| Writes the pixel data of imageSet in the DICOM data set. | |
| DcmDataset & | dataset () override |
| Dataset (or sub-item of a dataset) that will be used by the Modules. | |
| Public Member Functions inherited from ImFusion::Dicom::IOD | |
| IOD (DcmDataset &dataset, const OFString &sopClassUID) | |
| Creates a new IOD representation using the given DcmDataset and SOP class UID. | |
| template<typename T> | |
| const T * | searchModule () |
| Returns the first module of the given type or nullptr if no such module exists. | |
| DcmDataset & | dataset () override |
| Returns the dataset represented by this IOD. | |
| Public Member Functions inherited from ImFusion::Dicom::ModuleList | |
| const std::vector< const Module * > & | modules () const |
| List of all modules. | |
| Public Member Functions inherited from ImFusion::Dicom::ElementList | |
| const std::vector< ElementBase * > & | elements () const |
| List of all elements. | |
| Public Member Functions inherited from ImFusion::Dicom::ErrorRecorder | |
| virtual void * | registerErrorHandler (ErrorCallback handler) |
| Registers a new handler callback function. | |
| virtual void | unregisterErrorHandler (void *handler) |
| Removes a previously registered handler again. | |
| void * | forwardErrors (const ErrorRecorder *otherRecorder) |
| Convenient function to forward all errors registered to this recorder to another recorder. | |
| virtual void | registerError (const Error &error) const |
| Sends the given error to all error handler callbacks. | |
| void | registerError (Error::Code code, Error::Type type, const std::string &details, TagProxy tag=TagProxy()) const |
Public Attributes | |
| ConfigurableSequence< SegmentItem > | segmentSequence |
| Element< std::string > | segmentationType |
| Element< std::string > | segmentationFractionalType |
| Element< std::string > | segmentsOverlap |
| Element< std::string > | contentLabel |
| Element< int > | maximumFractionalValue |
| Public Attributes inherited from ImFusion::Dicom::EnhancedMultiFrameImageIOD | |
| Sequence< FunctionalGroupMacro > | sharedSequence |
| Sequence< FunctionalGroupMacro > | perFrameSequence |
| Sequence< DimensionIndexSequenceItem > | dimensionIndexSequence |
| PixelSpacingCalibration | pixelSpacingCalib |
| ModalityLUT | modalityLut |
| Element< double > | sliceThickness |
| Element< double > | spacingBetweenSlices |
| Public Attributes inherited from ImFusion::Dicom::IOD | |
| const OFString | sopClassUID |
| DICOM SOP used. | |
| std::string | pathInfo |
| Optional information from which file this IOD was loaded from (only use for display purposes). | |
| CommonModule | common |
| ImagePixel | imagePixel |
| Element< int > | numberOfFrames |
| If this element exists and is larger than 1, multiple frames will be loaded regardless of the SOP Class defining it or not. | |
Additional Inherited Members | |
| Public Types inherited from ImFusion::Dicom::ErrorRecorder | |
| using | ErrorCallback = std::function<void(const Error&)> |
| Alias for a function to call for each error recorded. | |
| Protected Member Functions inherited from ImFusion::Dicom::ModuleList | |
| virtual void | addModule (const Module &m) |
| Adds a the module to the list. Should only be called by the Module constructor. | |
| virtual void | removeModule (const Module &m) |
| Protected Member Functions inherited from ImFusion::Utils::NotCopyable | |
| NotCopyable (NotCopyable &&) noexcept=default | |
| NotCopyable & | operator= (NotCopyable &&) noexcept=default |
| NotCopyable (const NotCopyable &)=delete | |
| NotCopyable & | operator= (const NotCopyable &)=delete |
| Protected Attributes inherited from ImFusion::Dicom::IOD | |
| DcmDataset & | m_dataset |
| Protected Attributes inherited from ImFusion::Dicom::ModuleList | |
| std::vector< const Module * > | m_modules |
| List of all modules. | |
| Protected Attributes inherited from ImFusion::Dicom::ElementList | |
| std::vector< ElementBase * > | m_elements |
| List of all elements. | |
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overridevirtual |
Sorts and groups the given frames into sets of associated frames (e.g.
volumes).
All given frames should be somehow part of the returned frame sets. 2D images (i.e. IMAGESET) can be returned as framesets with only a single item. The exact order of the given frames is undefined. For multiframe Dicoms, this method is only called on the first frame. The IOD pointer held by each frame can be used to access special elements that are required for sorting and/or grouping.
Reimplemented from ImFusion::Dicom::EnhancedMultiFrameImageIOD.
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overridevirtual |
Loads the actual frame data into the given image.
The frameNumber in the given FrameDescriptor is the index of the corresponding frame as returned by loadFrames. If slice is not -1, the frame should be loaded into the given slice of the image.
Reimplemented from ImFusion::Dicom::EnhancedMultiFrameImageIOD.
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overridevirtual |
Loads any additional properties into the given image.
This method is called after the complete image data has been loaded. desc will contain valid sharedImageIndex and sliceIndex parameters indicating where this frame has been stored in the image. Implementations must not reorder, remove or resize the images of the given SharedImageSet!
The order or amount of images must not be changed inside the SharedImageSet! Also, the size of the individual images must not change. Otherwise, this would lead to inconsistent sharedImageIndex and sliceIndex values.
This method might throw an exception if the properties somehow make the image completely invalid. This should only be used as a last restort if there is really no way to use the image in any meaningful way!
Reimplemented from ImFusion::Dicom::EnhancedMultiFrameImageIOD.